PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G118000.1.p | ||||||||
Common Name | GLYMA_19G118000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 484aa MW: 52837.5 Da PI: 7.7285 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.6 | 7.6e-40 | 102 | 161 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Glyma.19G118000.1.p 102 PDKILQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-30 | 90 | 159 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.0E-32 | 104 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.5 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 484 aa Download sequence Send to blast |
MSQKEKGPGI RLFGRKIPVP ECQIPANSGP TDTCCSIKKT ELKIPSECGE NSEQQENSSD 60 SRDSKQESQH KVQENEPIVN PKPVEDNMET GSSDQDKVLK KPDKILQCPR CNSMDTKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYQHIIV TSDGIPASRL 180 ETTDSSGLQQ QHIASLESSV SFRSSADNCT MLKFGTDTPL CKSMDSMLNL RDQRRCADAS 240 SISCVEYRGE PSLCGSSVMT NGAQGNELSE HNTSNWLQCY PVPPWVLPYP GWNNVNSMEA 300 VHRSSAPMCN PYNNTGPTAM QWCPTPMVAI PGMCPPSIPL QFVPPSYWSG TPLWNAGTGA 360 VSIGSNACLS PTSSTNNSCC SGNGSPTLGK HTRDTVCTDE EKSEKCVLVP KTIRIDAPNE 420 ASKSPIIRAT LAIKLDKQQF VSNGDILKKI EPKEGKDRVL GASQILEANP AAISRAHAFQ 480 ESL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G118000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093966 | 0.0 | BT093966.1 Soybean clone JCVI-FLGm-18A13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304603.2 | 0.0 | zf-Dof domain-containing protein | ||||
TrEMBL | K7MXY4 | 0.0 | K7MXY4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G29610.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3502 | 31 | 65 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 6e-60 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G118000.1.p |