PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G105300.1.p
Common NameGLYMA_19G105300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 251aa    MW: 29180.6 Da    PI: 10.6494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G105300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.1e-2016106198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+  ++ +l+ g l++p+k+++++g+    +  l l++++g +W+++l  +k++g+++++kGWkeF++ + L  g  +vF+++++s f
  Glyma.19G105300.1.p  16 FFKII-TAQNLQDGKLMIPNKYVDKYGE--GLPNSLFLKTPNGTEWNFNL--KKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHRTSHF 100
                          66666.889999999***********74..47778***************..*******************************8777888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v++f+
  Glyma.19G105300.1.p 101 --QVHIFD 106
                          ..999987 PP
2B339.97.5e-131842343798
                          EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           l+ ++ r W  k           lt+GWk Fvk+n+Lk+g +++F+l++ ++ +++v++f+
  Glyma.19G105300.1.p 184 NLQVLNWRIWPGK-----------LTSGWKAFVKDNNLKVGNVCTFELIDGTKLTFLVHIFK 234
                          4444333333333...........69***********************999999*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2510108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2612107IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-2015106No hitNo description
PROSITE profilePS5086314.02915108IPR003340B3 DNA binding domain
SMARTSM010192.0E-1816108IPR003340B3 DNA binding domain
PfamPF023622.8E-1716106IPR003340B3 DNA binding domain
SMARTSM010192.9E-6151236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-12164234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14165234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-13167234No hitNo description
PfamPF023621.3E-10168235IPR003340B3 DNA binding domain
PROSITE profilePS508639.855197236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MASTFPHQLQ VKPIHFFKII TAQNLQDGKL MIPNKYVDKY GEGLPNSLFL KTPNGTEWNF  60
NLKKRDGKIW FQKGWKEFAE YHSLAHGHLL VFRRHRTSHF QVHIFDLSAL EIHYPSKGRE  120
GKMSPNHQGN NPRNEENLEY HKPGQKRKDN TSLKFLQPYI SNENLLTKFC RRHFGLLNKK  180
RHINLQVLNW RIWPGKLTSG WKAFVKDNNL KVGNVCTFEL IDGTKLTFLV HIFKGTKSSN  240
CSTSQGRIDV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.441992e-99pod| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G105300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548489.11e-132B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A0R0EK950.0A0A0R0EK95_SOYBN; Uncharacterized protein
STRINGGLYMA19G27955.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein