PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G099700.1.p
Common NameCOL17, GLYMA_19G099700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 386aa    MW: 43298.4 Da    PI: 7.1433
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G099700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.8e-07333535
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ +++k++ lfC+ ++  lC  C ++ H 
  Glyma.19G099700.1.p  3 PCDYCDSKPALLFCRADSAKLCLVCDQHVHA 33
                         7**************************9995 PP
2CCT64.72.7e-22338381144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R  a+lRYkeK+ktR+++K+irYesRKa+A++R+Rv+GrFvk++
  Glyma.19G099700.1.p 338 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKAS 381
                          6789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.954146IPR000315B-box-type zinc finger
SMARTSM003364.3E-10146IPR000315B-box-type zinc finger
PfamPF006433.8E-5341IPR000315B-box-type zinc finger
CDDcd000211.95E-8346No hitNo description
CDDcd000213.89E-54675No hitNo description
PROSITE profilePS5101714.842338380IPR010402CCT domain
PfamPF062035.3E-16338380IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLPCDYCDSK PALLFCRADS AKLCLVCDQH VHAANALSLK HVRFQICDSC KSDTAVLRCS  60
THNLVLCHNC DVDAHGADAS SLHHHHHHHR RLHGLSGCPS VPEIASALGL DFRAQEPVVP  120
TAASRDEVYE QVLEIARQRN NGLGAEQLKF DDSPGNDVVV VVDEMLIQQT PFTSLLMLQN  180
SESEFDARKS NDNNGYGTEA WDLHWNYNNP AYQPPQVWDF QLQKSTDCNE PRVVTFDGLE  240
VPKLFQDVHN MNYSTIGDDI DILSRNNQSD QSSSSHAKRK EESNKKARGG LSSESTLFES  300
IPYSGTNNVV VMEHLVGGNE NVSTLKARVS LQELAKNRGD AMLRYKEKKK TRRYDKHIRY  360
ESRKARADTR KRVRGRFVKA SDVQA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.529950.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G099700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688980.0HM068898.1 Glycine max CONSTANS-like zinc finger protein (COL17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278941.10.0zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_006604181.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLI1N7Y10.0I1N7Y1_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA19G27240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.12e-56B-box type zinc finger protein with CCT domain