PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G096400.1.p
Common NameGLYMA_19G096400, LOC100805039
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 682aa    MW: 75382.7 Da    PI: 6.1565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G096400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.31.5e-1313196801374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+a +ft  L+arl++ + +   a p+++ +++ns e+l+++++ ++++P+
  Glyma.19G096400.1.p 319 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAVCFTDSLSARLNS-TLTPKPATPSKPLTPSNSLEVLKIYQIVYQACPY 407
                          68****************************************************9.44444566888999999***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf+h+taNqaI eave eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      ++++etg+ L+++A++l++pfef++
  Glyma.19G096400.1.p 408 VKFAHFTANQAIFEAVEIEERVHVIDLDILQGYQWPAFMQALAARPAGAPFLRITGVGP----LLDAVRETGRCLTELAHSLRIPFEFHA 493
                          ***********************************************************....99************************* PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v ++ledl++++L+ + gEalaVn v +lhr++       ++  ++L ++++  P +v++veqea+hn++ Fl rfleal+yysa+fds
  Glyma.19G096400.1.p 494 -VGEQLEDLKPHMLNRRVGEALAVNAVNHLHRVP------GNHLGNLLTMLRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDS 576
                          .7*******************************9......444557******************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+a++p+es +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ +gyr+ e++g+l+l
  Glyma.19G096400.1.p 577 LDATFPAESAQRAKVEQYIFAPEIRNIVACEGAERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLL 666
                          ****************************************************************************************** PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gW+dr+++++SaWr
  Glyma.19G096400.1.p 667 GWQDRAIIAASAWR 680
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.935293660IPR005202Transcription factor GRAS
PfamPF035145.0E-129319680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MMNSLCGSSL SLKSENNNSR TKLQQPTSSN DSVLQSKKNN ATQSSGDLDQ TSLTPPSLNL  60
PSLKFDLDGD VEVQSPDSSM WESFFADHID GDFMISSPVR TPQAASSYNC NYNYAQGMQG  120
QSLSGCSPPR FSSSQIGAFN SSSSLNKGKG LSPLHRVFNS PNNQYMQHVE NLSLPAIEEF  180
LEDYQTKVSS SDHNITSSSE CFDLSSHQIP SSILDGLALH NSSRYHRGSV VDEESTVHGG  240
GGGGGGSSQL SQESDIYHQM GSMASASLSQ ALQQERYQEK QQKQQAQQLQ QQQRQHQQEN  300
LMVPIPIEIE QEQDSGLQLV HLLLACAEAV AKEEYMLARR YLHHLNRVVT PLGDSMQRVA  360
VCFTDSLSAR LNSTLTPKPA TPSKPLTPSN SLEVLKIYQI VYQACPYVKF AHFTANQAIF  420
EAVEIEERVH VIDLDILQGY QWPAFMQALA ARPAGAPFLR ITGVGPLLDA VRETGRCLTE  480
LAHSLRIPFE FHAVGEQLED LKPHMLNRRV GEALAVNAVN HLHRVPGNHL GNLLTMLRDQ  540
APSIVTLVEQ EASHNGPYFL GRFLEALHYY SAIFDSLDAT FPAESAQRAK VEQYIFAPEI  600
RNIVACEGAE RFERHERLEK WRKIMEGKGF KGVALSPNAV TQSKILLGLY SCEGYRLTED  660
KGCLLLGWQD RAIIAASAWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-993076796377Protein SCARECROW
5b3h_D1e-993076796377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G096400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358640.0AC235864.2 Glycine max clone GM_WBb0106P01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553957.10.0DELLA protein GAI
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLK7MXH70.0K7MXH7_SOYBN; Uncharacterized protein
STRINGGLYMA19G26735.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-98GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]