PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 189aa MW: 21031.4 Da PI: 9.7299

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G094100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.4	5.9e-33	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ Glyma.19G094100.1.p 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 167 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-34	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-30	101	168	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	104	169	IPR003657	WRKY domain
SMART	SM00774	1.5E-39	109	168	IPR003657	WRKY domain
Pfam	PF03106	7.0E-27	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MENYSMLFSV SNSSSYPIGV GSSQIGYSGQ SSNAFLGLRP SNELASDDHE KRQGGGDGNM 60 LMSQISGGSI NVSDELGGSG NSNNNKKKGE KKVRKPRYAF QTRSQVDILD DGYRWRKYGQ 120 KAVKNNKFPR SYYRCTHQGC NVKKQVQRLT KDEGVVVTTY EGVHTHPIEK TTDNFEHILS 180 QMQIYTPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
2lex_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.31993	0.0	cotyledon\| hypocotyl\| leaf\| meristem\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G094100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ322693	0.0	DQ322693.1 Glycine max WRKY53 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237357.2	1e-139	WRKY transcription factor 53
Refseq	XP_028216905.1	1e-139	probable WRKY transcription factor 75
TrEMBL	A0A0B2P730	1e-138	A0A0B2P730_GLYSO; Putative WRKY transcription factor 75
TrEMBL	A0A0R4J614	1e-138	A0A0R4J614_SOYBN; Uncharacterized protein
STRING	GLYMA19G26400.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	3e-59	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Glyma.19G094100.1.p