PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G062000.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 407aa    MW: 46589.4 Da    PI: 9.7223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G062000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-16168214148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W++eEd  lv++vk++G + W+ Iar ++ gR +kqc++rw+++l
  Glyma.19G062000.1.p 168 KGQWSAEEDRVLVQLVKRFGLKKWSHIARLLN-GRVGKQCRERWHNHL 214
                          799*****************************.*************97 PP
2Myb_DNA-binding52.11.5e-16220262145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W +eEd +l++a+k  G++ W+ Iar+m+ gRt++ +k++w+
  Glyma.19G062000.1.p 220 KESWNEEEDRILIEAHKGIGNR-WAEIARRMP-GRTENTIKNHWN 262
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.203163218IPR017930Myb domain
SuperFamilySSF466893.37E-30165261IPR009057Homeodomain-like
SMARTSM007177.2E-15167216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-26169222IPR009057Homeodomain-like
PfamPF139213.6E-18171228No hitNo description
CDDcd001671.03E-13171214No hitNo description
PROSITE profilePS5129419.44219269IPR017930Myb domain
SMARTSM007174.1E-15219267IPR001005SANT/Myb domain
CDDcd001671.53E-11222265No hitNo description
Gene3DG3DSA:1.10.10.601.0E-19223267IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEFDPIFPAE KIHYLSSIFS GIKPEIPAFI PMSQENNNNT TFCMYQNNFK NHDNHHPTAN  60
FFSEGFNSSI LTPLFSLSSS SGDSSYPNEC LKGSFANDNN FYHPIMPYAQ NNTQNEPMHG  120
PNRAIWDFSQ KIPLRCSSAG AGATSQPHQM QRRSNGEIQH KNMTNIIKGQ WSAEEDRVLV  180
QLVKRFGLKK WSHIARLLNG RVGKQCRERW HNHLRPNIRK ESWNEEEDRI LIEAHKGIGN  240
RWAEIARRMP GRTENTIKNH WNATKRRLNA KRLRNKRRSS KGPTLLESYI RQVTAEEDAE  300
KELIKNSMNN MNLKGERSSN TTNTKTKYPR LFRVRYDSSE GGFSSEEDEV GRGVQQLHGG  360
GGAYVPTMVN AAVEDGTMGY DVAMEMAPEV QMKKEMDLME MIYRKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-441632672106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G062000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555068.10.0myb-like protein A isoform X2
TrEMBLA0A0R0ESD10.0A0A0R0ESD1_SOYBN; Uncharacterized protein
STRINGGLYMA19G13923.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-56myb domain protein 98