PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.19G056400.2.p | ||||||||
Common Name | GLYMA_19G056400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 364aa MW: 40416.8 Da PI: 4.8988 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.3e-30 | 56 | 198 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 p G++F+P+d el+ e+L++k+ + + ++e+i++++ i++++P++Lp +k++ + ++fF+++ ++yatg+rk+r+ Glyma.19G056400.2.p 56 PLGVKFDPSDVELL-EHLAAKCGIGNtqqhMFINEFIPTLEgdqgICYTHPENLP-GAKKDGSYVHFFHRTTNAYATGQRKRRKihhqqg 143 89************.999999877663444223334554423445**********.556778899******************8677777 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 ++ +W++tgk+k++++ +g+++g kk++v+y ++++g+ k++Wvmh+y+l Glyma.19G056400.2.p 144 ltEEHVRWHKTGKTKAIIE-DGAHKGFKKIMVLYVRSSENGSrsyKSNWVMHQYHL 198 7444788************.999***********655555544449********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-32 | 39 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.206 | 55 | 232 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-12 | 56 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MARSWLIDIG GFAKKVKSTT LSSADQIKDC GAYRECPNCS YHIDNSDVST EWPGFPLGVK 60 FDPSDVELLE HLAAKCGIGN TQQHMFINEF IPTLEGDQGI CYTHPENLPG AKKDGSYVHF 120 FHRTTNAYAT GQRKRRKIHH QQGLTEEHVR WHKTGKTKAI IEDGAHKGFK KIMVLYVRSS 180 ENGSRSYKSN WVMHQYHLGT VEEEKEGPRT PKPNPPNPPR AGKSVDCDDN IDETVLLSSA 240 LDTKTIPGES HAPQSDIQDQ DFTGNAAWLA GESQAEESTK YDGCDDILLC KEILDSSAIL 300 NDPGLDSTNL EDIAGYATQR ARNDNESCGI SVLDSLELDT PDFDLSSLYF CSQDSILDWM 360 DRL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38078 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.19G056400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098015 | 2e-91 | BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604012.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Refseq | XP_028216994.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 4e-71 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0R0EID4 | 0.0 | A0A0R0EID4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G08510.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 4e-83 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.19G056400.2.p |