PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CO-like

Protein Properties

Length: 367aa MW: 40905.6 Da PI: 5.5623

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.19G039000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.4e-06	20	60	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + l+C+ ++ +lC +C H H+ Glyma.19G039000.1.p 20 RVCDTCLSAPCVLYCHADSAYLCSSCDARVHAAnrvasrHK 60 68**************************9995556677776 PP
2	zf-B_box	29.9	1.1e-09	61	107	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ + C+ + lC +C +H+ H++vp+ Glyma.19G039000.1.p 61 RVWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplasrHNRVPI 107 5689****************************6699999999997 PP
3	CCT	70.2	5.3e-24	297	340	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeKkirY+sRKa+Ae+RpR+KGrF+k++ Glyma.19G039000.1.p 297 REARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRT 340 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	6.2E-8	17	64	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.655	17	64	IPR000315	B-box-type zinc finger
CDD	cd00021	2.70E-7	20	64	No hit	No description
PROSITE profile	PS50119	11.192	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.0E-7	61	107	IPR000315	B-box-type zinc finger
CDD	cd00021	2.92E-7	63	107	No hit	No description
SMART	SM00336	2.0E-9	65	107	IPR000315	B-box-type zinc finger
Pfam	PF06203	8.2E-18	297	339	IPR010402	CCT domain
PROSITE profile	PS51017	16.827	297	339	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MLKEGTNNVG GSNTGTTWSR VCDTCLSAPC VLYCHADSAY LCSSCDARVH AANRVASRHK 60 RVWVCEACER APAAFLCKAD AASLCSSCDA DIHSANPLAS RHNRVPILPI SGSLFREPEH 120 NHKRVEHAFV NEVEEEEEGV FDEYEDEVEA ASWLLPHPMK NNDEIEENDC GDEGFLFVDE 180 YLDNLVDCCN SCGHNDNQFS NVYQHQQNYN TVPQNYVVVP VQVPQHFQPG LDFDSSKAGF 240 SYDGSLSQSV SVSSMDVGVV PESTVSGISM SHSKSPIGTN DLFPPLLMPS HLTPMDREAR 300 VLRYREKKKT RKFEKKIRYA SRKAYAETRP RIKGRFAKRT DVEAEVDQMF STKLFNEVGG 360 SIFPTF*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MLKEGTNNVG GSNTGTTWSR VCDTCLSAPC VLYCHADSAY LCSSCDARVH AANRVASRHK  60
RVWVCEACER APAAFLCKAD AASLCSSCDA DIHSANPLAS RHNRVPILPI SGSLFREPEH  120
NHKRVEHAFV NEVEEEEEGV FDEYEDEVEA ASWLLPHPMK NNDEIEENDC GDEGFLFVDE  180
YLDNLVDCCN SCGHNDNQFS NVYQHQQNYN TVPQNYVVVP VQVPQHFQPG LDFDSSKAGF  240
SYDGSLSQSV SVSSMDVGVV PESTVSGISM SHSKSPIGTN DLFPPLLMPS HLTPMDREAR  300
VLRYREKKKT RKFEKKIRYA SRKAYAETRP RIKGRFAKRT DVEAEVDQMF STKLFNEVGG  360
SIFPTF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25374	4e-64	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout development.
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Does not affect flowering time.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.19G039000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM068901	0.0	HM068901.1 Glycine max CONSTANS-like zinc finger protein (COL13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001278944.1	0.0	zinc finger protein CONSTANS-LIKE 2-like
Refseq	XP_028217924.1	0.0	zinc finger protein CONSTANS-LIKE 2-like
Swissprot	Q96502	1e-114	COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	A0A0B2REJ3	0.0	A0A0B2REJ3_GLYSO; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	I1N6I8	0.0	I1N6I8_SOYBN; CONSTANS-like zinc finger protein
STRING	GLYMA19G05170.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3827	33	52
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-68	CONSTANS-like 2

Link Out ? help Back to Top
Phytozome	Glyma.19G039000.1.p
Entrez Gene	100805051

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]