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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G038100.1.p |
| Common Name | GLYMA_19G038100, LOC100796379 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 337aa MW: 37944.7 Da PI: 7.1941 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G038100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l+++ G g+W+ Iar g+ R++k+c++rw +yl
Glyma.19G038100.1.p 22 KGLWSPEEDEKLLRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 69
678*******************************************97 PP
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| 2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 75 | 119 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++++E+e +++++ lG++ W+ Ia++++ gRt++++k++w++
Glyma.19G038100.1.p 75 RGAFSPQEEEVIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 119
89********************.*********.***********986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MRKPDMMGKD KINNNIKSKL RKGLWSPEED EKLLRYMITK GQGCWSDIAR NAGLQRCGKS 60
CRLRWINYLR PDLKRGAFSP QEEEVIIHLH SILGNRWSQI AARLPGRTDN EIKNFWNSTL 120
KKRLKMNNNN STLSPNNSDS SGPKDVNVMG GIMSMNEHDL MTMCMDSSSS TSSSSCMQSM 180
HATNMVLTNP FPLLPNNRYD MMTGATGFLD NMAAACLTQV GMVDHDHGVV HGTLEPNKTR 240
LGSDFSLPPL ESRSIEDNSS TPIDHVKSHN NNNHFKNSCF NNTDHYHHIQ SSNNVVVEDL 300
FGFGNHGQGE NFRMGEWDLE GLMQDISYFP SLDFQV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in fiber and vessel cells that are undergoing secondary wall thickening in floral stems. Expressed in vessels but not in xylary fibers in the developing secondary xylem of roots. {ECO:0000269|PubMed:19808805}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
