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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G034600.1.p |
| Common Name | GLYMA_19G034600, LOC100820188 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 245aa MW: 27959.1 Da PI: 9.7748 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G034600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 81.9 | 4.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss
Glyma.19G034600.1.p 9 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 59
78***********************************************96 PP
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| 2 | K-box | 94.9 | 1.3e-31 | 84 | 173 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++ + +++ + kL ++e L+r++R+++GedL++L+l+eLq+Le+qLe+++k+iR++Kn+++ e+i++lqkk ++lqe+n L+kk++e
Glyma.19G034600.1.p 84 DESQGNWSLQCFKLTGKVEVLERNLRNFVGEDLDPLNLRELQSLEHQLETAIKRIRTRKNQVMNESISDLQKKARQLQEQNGILTKKIKE 173
56678999*******************************************************************************987 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.8E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 30.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 9.29E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.21E-37 | 2 | 75 | No hit | No description |
| PRINTS | PR00404 | 7.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-23 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.1E-26 | 85 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.1 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE 60
SSMENVLERY ERHTHIGKLV GDGDESQGNW SLQCFKLTGK VEVLERNLRN FVGEDLDPLN 120
LRELQSLEHQ LETAIKRIRT RKNQVMNESI SDLQKKARQL QEQNGILTKK IKEKGKEVVE 180
RPHCGPETLG LTCPPELQRQ QRVFPSLTLC ETLQAGHLEE VVEARTVPTA STHIPPWMLH 240
PFTR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
