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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.19G034500.1.p |
| Common Name | GLYMA_19G034500 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 250aa MW: 28762.7 Da PI: 9.0557 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.19G034500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 99.4 | 1.5e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
Glyma.19G034500.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
79***********************************************96 PP
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| 2 | K-box | 99.7 | 4.3e-33 | 84 | 174 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++ ++s+++e+ kLk++ e+Lqr+qR+llGedL++L+ k+L+qLe+qL++slk++Rs+K++++l+q+ +lq+ke++l e+n++L++kle
Glyma.19G034500.1.p 84 GKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLE 173
45667999********************************************************************************98 PP
K-box 100 e 100
e
Glyma.19G034500.1.p 174 E 174
7 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.445 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 5.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.09E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.08E-44 | 2 | 76 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.2E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.0E-27 | 88 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.392 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCST 60
NSMLKTLERY QKCSYGAVEV SKPGKELEQS SYREYLKLKA RFESLQRTQR NLLGEDLGPL 120
NTKDLEQLER QLDSSLKQVR STKTQFMLDQ LADLQNKEHM LVEANRSLTM KLEEINSRNQ 180
YRQTWEAGEQ SMPYGTQNAH SQGFFQPLEC NPTLQIGSDY RYIPEASEQQ LAATTQAQQV 240
NGFIPGWML*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 8e-38 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 8e-38 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 8e-38 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 8e-38 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ159905 | 0.0 | DQ159905.1 Glycine max MADS-box protein (SEP1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Huang F,Chi Y,Gai J,Yu D
Identification of transcription factors predominantly expressed in soybean flowers and characterization of GmSEP1 encoding a SEPALLATA1-like protein.
Gene, 2009. 438(1-2): p. 40-8
[PMID:19289160] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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