PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G024500.1.p
Common NameGLYMA_19G024500, LOC100785620
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 363aa    MW: 41382.2 Da    PI: 6.668
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-55211471129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +kv ++ + + ++i e+d++k+ePwdLp ++k +ekewyfF+ rd+ky+tg+r+nrat +gyWkatgkd+
  Glyma.19G024500.1.p  21 LPPGFRFHPTDEELITHYLSQKVLDSCFCA-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDR 109
                          79************************9888.89***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++  ++l+g+kktLvfykgrap+gek++Wvmheyrle
  Glyma.19G024500.1.p 110 EIYK-AKTLIGMKKTLVFYKGRAPSGEKSNWVMHEYRLE 147
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-6317171IPR003441NAC domain
PROSITE profilePS5100558.64821171IPR003441NAC domain
PfamPF023658.2E-3022146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MQAMENNNYQ REIMEEQRFE LPPGFRFHPT DEELITHYLS QKVLDSCFCA RAIGEADLNK  60
CEPWDLPCMA KMGEKEWYFF CVRDRKYPTG QRTNRATGAG YWKATGKDRE IYKAKTLIGM  120
KKTLVFYKGR APSGEKSNWV MHEYRLENEH SVQNPPKKAM NDWAICRIFQ KSNCGKKMPI  180
SRLLRFSTFA KDIPSLMDSS PNNNNNSESK PVLGESSHAT CFSDPNQSED KKTENENIAE  240
SYEIIMLASS YSSNPSDVSP DSWTFSKSAP TVSHQSLQVG NSHCSDYFML HQEQSMLGML  300
IENHGSSTGQ RTQKAQDNNK DFDADMSSVM YNNNEMFQRS FGNQEYSSPS VGHVYSSGLW  360
GF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-551817714171NO APICAL MERISTEM PROTEIN
1ut4_B4e-551817714171NO APICAL MERISTEM PROTEIN
1ut7_A4e-551817714171NO APICAL MERISTEM PROTEIN
1ut7_B4e-551817714171NO APICAL MERISTEM PROTEIN
3swm_A4e-551817717174NAC domain-containing protein 19
3swm_B4e-551817717174NAC domain-containing protein 19
3swm_C4e-551817717174NAC domain-containing protein 19
3swm_D4e-551817717174NAC domain-containing protein 19
3swp_A4e-551817717174NAC domain-containing protein 19
3swp_B4e-551817717174NAC domain-containing protein 19
3swp_C4e-551817717174NAC domain-containing protein 19
3swp_D4e-551817717174NAC domain-containing protein 19
4dul_A4e-551817714171NAC domain-containing protein 19
4dul_B4e-551817714171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.8950.0seed coat
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G024500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-98AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554895.20.0NAC domain-containing protein 92
RefseqXP_028217622.10.0NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-110NC100_ARATH; NAC domain-containing protein 100
TrEMBLI1N6660.0I1N666_SOYBN; Uncharacterized protein
STRINGGLYMA19G02850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-107NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]