![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.19G022200.1.p | ||||||||
Common Name | GLYMA_19G022200, LOC100799188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 98aa MW: 10065.1 Da PI: 8.6218 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.5 | 3.1e-28 | 20 | 83 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt........aaalkCaACgCHRnFHRreve 58 +v+Y eC+kNhAa++Gg+avDGC+Efm+s + +g +aal+CaACgCHRnFH+r+++ Glyma.19G022200.1.p 20 AVKYGECQKNHAANVGGYAVDGCREFMASGSGSGGgsgggegtSAALTCAACGCHRNFHKRQEA 83 699*************************954443346777777*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-20 | 18 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.7E-26 | 21 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-21 | 22 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.095 | 23 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 98 aa Download sequence Send to blast |
MRKRQVVVRR EEPQRSGVRA VKYGECQKNH AANVGGYAVD GCREFMASGS GSGGGSGGGE 60 GTSAALTCAA CGCHRNFHKR QEAEVVSECS SPTSNGT* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.55982 | 1e-166 | flower| hypocotyl| pod| seed coat |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.19G022200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT089461 | 1e-55 | BT089461.1 Soybean clone JCVI-FLGm-2C17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003554445.1 | 4e-64 | mini zinc finger protein 2 | ||||
Refseq | XP_028216364.1 | 4e-64 | mini zinc finger protein 2-like | ||||
Swissprot | Q9LJW5 | 1e-33 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A445FB87 | 9e-63 | A0A445FB87_GLYSO; Mini zinc finger protein 2 | ||||
TrEMBL | I1N648 | 9e-63 | I1N648_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G02610.2 | 1e-63 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1550 | 34 | 100 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-29 | mini zinc finger 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.19G022200.1.p |
Entrez Gene | 100799188 |
Publications ? help Back to Top | |||
---|---|---|---|
|