PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G021900.1.p
Common NameGLYMA_19G021900, LOC100778120
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 368aa    MW: 41529.9 Da    PI: 7.0403
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G021900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.1e-54141392128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++
  Glyma.19G021900.1.p  14 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRP 102
                          79***************************.89***************9888999************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Glyma.19G021900.1.p 103 IYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 139
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5711170IPR003441NAC domain
PROSITE profilePS5100556.16413170IPR003441NAC domain
PfamPF023654.1E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEERNEMERI DDVMPGFRFH PTDEELVDFY LKRKIQQKSL PIELIKQVDI YKYDPWDLPK  60
LAGTGEKEWY FYCPRDRKYR NSARPNRVTR AGFWKATGTD RPIYSSEGKC IGLKKSLVFY  120
RGRAAKGMKT DWMMHEFRLP CISDSSPPKK LSDKSLPPSD SWAICRIFKK ANSFSMAQKA  180
LSLPWISQLP GGMVSDMFTQ GLNCHNIESP AIQFCGDKQD ELHQVSNNAI NTNFTASDIP  240
TYKPINNSTA SKSPVSDGDL AADNFIFYTG PTKCCSTLLD ATNSMLSHPN PDYIAFEEPN  300
QQHYSGFSIN LPQDMQQNMS TETGTTGFPF SLSPPYDAAW KASSVAWDSP PCPSDMSTTY  360
STNKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5411753173Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G021900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-121AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554886.10.0putative NAC domain-containing protein 94
RefseqXP_028217734.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW52e-94NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A445FB780.0A0A445FB78_GLYSO; Putative NAC domain-containing protein 94
TrEMBLI1N6460.0I1N646_SOYBN; Uncharacterized protein
STRINGGLYMA19G02580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.15e-90NAC domain containing protein 94