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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.19G017900.1.p |
Common Name | GLYMA_19G017900 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 346aa MW: 37747.2 Da PI: 6.4152 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.19G017900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.4 | 6.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg WT+eEd +++ +v +G+g+W++++++ g++R++k+c++rw +yl
Glyma.19G017900.1.p 14 RGLWTPEEDAKILAYVVNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
788*******************************************97 PP
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2 | Myb_DNA-binding | 44.4 | 3.9e-14 | 70 | 110 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+T++E+el+++++ G++ W+ Ia++++ gRt++++k++w++
Glyma.19G017900.1.p 70 FTPQEEELIINLHGAIGSR-WSIIAKRLP-GRTDNDVKNYWNT 110
9******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MGRPPCCDKS NVKRGLWTPE EDAKILAYVV NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDGF TPQEEELIIN LHGAIGSRWS IIAKRLPGRT DNDVKNYWNT KLRKKLMKMG 120 IDPVTHKPVS QVLSDLGSIS GLPNTTTNQI AFINKDLMMS NMLPITKTEP SGSNKSTVEH 180 TQEGQVPSWE HHIPYQVIIN SENIQSHVLS EAASSTSSSS SSNITQLGSP QSYSCQTPQA 240 QIAPPCSSFD WSEFLQSDSF NWSLNPSSGI IQSEAELSNN AKSNGNDMQG GASEGSGSGA 300 VACGASMEYQ INKQCEAHSF VDGILDRDSE IRAAFPELLD ASFDC*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Uniprot | TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. |
Functional Description ? help
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Source |
Description |
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |