PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G002900.3.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 364aa    MW: 40699.3 Da    PI: 5.9921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G002900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.7e-31301712128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                          p+G++F+P+d el+ e+L++k+   +      +  +++i++++    i++++P++Lp  +k++ ++++fF+k++++yatg+rk+r+    
  Glyma.19G002900.3.p  30 PVGVKFDPSDVELL-EHLAAKCCIGNrephmfI--HQFIPTLEgeqgICYTHPQNLP-GAKTDGSSVHFFHKTANAYATGRRKRRKihhq 115
                          89************.888888665554666431..333444322334**********.55678899*******************86777 PP

                  NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               ++ +W++tg++k+v++ +g ++g kk++v+y  +++  k+ kt+Wvmh+y+l
  Glyma.19G002900.3.p 116 dgltEEHVRWHKTGRTKAVTE-DGVHKGFKKIMVLYirSKKGTKPYKTNWVMHQYHL 171
                          777444889***********9.999***********7645666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3713189IPR003441NAC domain
PROSITE profilePS5100529.13929189IPR003441NAC domain
PfamPF023654.0E-1330171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKDCGTYSEC PKCHYHIDNS NVSHEWPGFP VGVKFDPSDV ELLEHLAAKC CIGNREPHMF  60
IHQFIPTLEG EQGICYTHPQ NLPGAKTDGS SVHFFHKTAN AYATGRRKRR KIHHQDGLTE  120
EHVRWHKTGR TKAVTEDGVH KGFKKIMVLY IRSKKGTKPY KTNWVMHQYH LGSEVEKDGE  180
YVVSKIFYQQ HKQNEKNEEN TMVEDSNVAA QAGPRTPKPN PPTRPCTAKC DDNFDENELL  240
PFIQDARPIP GESHAPPSNV QDEDPAWLAG ESQADCDFDG LEDILLCKEI LQSSALLNHS  300
GLTSTFNGDA KANKLVAPGN NNDYGSYGVS VLDTLELDTP PDFDLSNLQF GSQDSTLQWI  360
DTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.391080.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G002900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0156431e-168AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603789.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A0R0ESN70.0A0A0R0ESN7_SOYBN; Uncharacterized protein
STRINGGLYMA19G00640.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-86NAC domain containing protein 44