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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G297100.1.p | ||||||||
Common Name | GLYMA_18G297100, LOC100807854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 302aa MW: 32731 Da PI: 8.2627 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ Glyma.18G297100.1.p 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGSW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 ql+q+++e +l ++ Glyma.18G297100.1.p 94 QLCQAAVENVLKGA 107 ******99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 2.9E-99 | 1 | 301 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.927 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRILNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG 120 RGPPLKAYDI RHVSKDENSA AASNETQHQR VKTRSRVKRP LANNNAKPKS TTNENNNNKG 180 TELGSAEPSL VACEWTEEVM NRSGSHDSTL SHQSEAANAV ESESMLSAET PETSILFREE 240 PETNPKRVSD DVGLELTLGF EPVSRARPVV PVKKRRIELK NFSGSAESGS CKMELGLECS 300 A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34051 | 0.0 | cotyledon| pod| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G297100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552728.1 | 0.0 | LOB domain-containing protein 41 | ||||
Refseq | XP_028215353.1 | 0.0 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-106 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A445FZG7 | 0.0 | A0A445FZG7_GLYSO; LOB domain-containing protein 41 | ||||
TrEMBL | I1N5C2 | 0.0 | I1N5C2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G53440.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-97 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G297100.1.p |
Entrez Gene | 100807854 |