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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G280700.1.p | ||||||||
Common Name | GLYMA_18G280700, LOC100786452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 371aa MW: 41284.4 Da PI: 9.5783 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.8 | 7.4e-46 | 96 | 229 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s +s+ ++++ +s+ +++ Glyma.18G280700.1.p 96 ATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVESFEfsssSEGEVVSTIQQQDL 185 89**************************************************************55555222233355555555555555 PP TCP 88 g.kaaksaakskksqksaasalnlakesrakarararertrekm 130 + ++ + +++k ++ a ++ +++kesr+kararare+t++k Glyma.18G280700.1.p 186 QqQHGINLENGKLKEPAAYCVKAKMKESREKARARAREKTSSKV 229 524444455999999999999*****************888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-42 | 97 | 228 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.401 | 98 | 156 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.258 | 211 | 228 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MFPSTNYTSS GSYPRFPSSS SSTSPYPSFT LLHPENSSSS NNTFLHDPLA LTYIPSHYHA 60 PIPETLANWA VADCAILNQD LGGALYGITK KPMKKATKKD RHSKIHTSQG LRDRRVRLSI 120 EIARKFFDLQ DMLGFDKASN TLDWLFTKSK KAIKELTRSK HSVESFEFSS SSEGEVVSTI 180 QQQDLQQQHG INLENGKLKE PAAYCVKAKM KESREKARAR AREKTSSKVL CNTSGEGKVQ 240 ELKKKCPATE NPQILNQLRS TLQPPHPQNV GGEVPRDDDF NVIEESIVIR RKLKHTLMSS 300 NIHHQNAVIP KEASVNNSDY HSFPNLSPNW EANNGANGRS TFCAIASMNL STGLQIFGKS 360 WEECTNPHPS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G280700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551798.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_028213297.1 | 0.0 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A445FYP0 | 0.0 | A0A445FYP0_GLYSO; Transcription factor TCP1 | ||||
TrEMBL | K7MV75 | 0.0 | K7MV75_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G51581.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G280700.1.p |
Entrez Gene | 100786452 |