PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G280700.1.p
Common NameGLYMA_18G280700, LOC100786452
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 371aa    MW: 41284.4 Da    PI: 9.5783
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G280700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.87.4e-46962292130
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 
                          a+kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s +s+     ++++ +s+ +++  
  Glyma.18G280700.1.p  96 ATKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSVESFEfsssSEGEVVSTIQQQDL 185
                          89**************************************************************55555222233355555555555555 PP

                  TCP  88 g.kaaksaakskksqksaasalnlakesrakarararertrekm 130
                          + ++  + +++k ++  a ++ +++kesr+kararare+t++k 
  Glyma.18G280700.1.p 186 QqQHGINLENGKLKEPAAYCVKAKMKESREKARARAREKTSSKV 229
                          524444455999999999999*****************888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-4297228IPR005333Transcription factor, TCP
PROSITE profilePS5136936.40198156IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.258211228IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFPSTNYTSS GSYPRFPSSS SSTSPYPSFT LLHPENSSSS NNTFLHDPLA LTYIPSHYHA  60
PIPETLANWA VADCAILNQD LGGALYGITK KPMKKATKKD RHSKIHTSQG LRDRRVRLSI  120
EIARKFFDLQ DMLGFDKASN TLDWLFTKSK KAIKELTRSK HSVESFEFSS SSEGEVVSTI  180
QQQDLQQQHG INLENGKLKE PAAYCVKAKM KESREKARAR AREKTSSKVL CNTSGEGKVQ  240
ELKKKCPATE NPQILNQLRS TLQPPHPQNV GGEVPRDDDF NVIEESIVIR RKLKHTLMSS  300
NIHHQNAVIP KEASVNNSDY HSFPNLSPNW EANNGANGRS TFCAIASMNL STGLQIFGKS  360
WEECTNPHPS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G280700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551798.10.0transcription factor CYCLOIDEA
RefseqXP_028213297.10.0transcription factor CYCLOIDEA-like
TrEMBLA0A445FYP00.0A0A445FYP0_GLYSO; Transcription factor TCP1
TrEMBLK7MV750.0K7MV75_SOYBN; Uncharacterized protein
STRINGGLYMA18G51581.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-30TCP family protein