PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

CO-like

Protein Properties

Length: 353aa MW: 38986.5 Da PI: 6.2653

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G278100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.1e-06	13	51	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39 r+C+++ + + + fC++ +lC++C + H + H++ Glyma.18G278100.1.p 13 RMCDTCRSVPSTVFCRSHTAFLCATCDTRLHVSltwHER 51 78**************************99977777875 PP
2	zf-B_box	28.7	2.8e-09	52	97	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H H +vp+ Glyma.18G278100.1.p 52 VWVCEACERAPAAFLCKADAASLCASCDADIHAAnplasrHHRVPI 97 689*****************************66889999777775 PP
3	CCT	68.2	2.2e-23	283	326	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Glyma.18G278100.1.p 283 REARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRT 326 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.15	10	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.627	10	54	IPR000315	B-box-type zinc finger
CDD	cd00021	1.36E-5	13	54	No hit	No description
SMART	SM00336	1.5E-13	50	97	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.964	50	97	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.7E-7	51	97	IPR000315	B-box-type zinc finger
CDD	cd00021	3.84E-8	53	97	No hit	No description
PROSITE profile	PS51017	16.539	283	325	IPR010402	CCT domain
Pfam	PF06203	3.3E-17	283	325	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MLEGQATTPT WPRMCDTCRS VPSTVFCRSH TAFLCATCDT RLHVSLTWHE RVWVCEACER 60 APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI AAANNNNNDD DDVADVDDED 120 ETASWLLLNP IKSATVPNTN NNNNNNGFLY NGEVDEYLDL VDNCNSCGDN NHFASAAATT 180 DHYAQHQHFA GVSQKSYAGD SVVPVQQHQH FQLGLEFDNS KPAFSYNGSV SQSVSVSSMD 240 IGVVPESPMR DVSIAHTRPP KGTIDLFSGP PIQVPSHFSP MDREARVLRY REKKKMRKFE 300 KTIRYASRKA YAETRPRIKG RFAKRTDVEA EVDQMFSTTL ITEVGYGIVP SF*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MLEGQATTPT WPRMCDTCRS VPSTVFCRSH TAFLCATCDT RLHVSLTWHE RVWVCEACER  60
APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI AAANNNNNDD DDVADVDDED  120
ETASWLLLNP IKSATVPNTN NNNNNNGFLY NGEVDEYLDL VDNCNSCGDN NHFASAAATT  180
DHYAQHQHFA GVSQKSYAGD SVVPVQQHQH FQLGLEFDNS KPAFSYNGSV SQSVSVSSMD  240
IGVVPESPMR DVSIAHTRPP KGTIDLFSGP PIQVPSHFSP MDREARVLRY REKKKMRKFE  300
KTIRYASRKA YAETRPRIKG RFAKRTDVEA EVDQMFSTTL ITEVGYGIVP SF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	296	REKKKMR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55893	0.0	cotyledon\| flower\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout development.
Uniprot	TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Does not affect flowering time.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G278100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expressed with a circadian rhythm showing a peak at dawn.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ371898	0.0	DQ371898.1 Glycine max zinc finger protein CONSTANS-LIKE 2 (COL2c) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001235843.2	0.0	zinc finger protein CONSTANS-LIKE 2
Swissprot	Q96502	1e-118	COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBL	I1N4U7	0.0	I1N4U7_SOYBN; Uncharacterized protein
STRING	GLYMA18G51320.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3827	33	52
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-94	CONSTANS-like 2

Link Out ? help Back to Top
Phytozome	Glyma.18G278100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Mol. Biol. Evol., 2015. 32(9): p. 2284-301 [PMID:25972346]