PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G275400.1.p

Common Name

GLYMA_18G275400, Glyma18g51080.1, LOC100792653

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 341aa MW: 38093.9 Da PI: 4.7896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G275400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57	3.5e-18	44	94	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Glyma.18G275400.1.p 44 QRSKHSETEQRRRSKINERFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 94 799************************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.7E-24	43	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.777	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-20	43	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-15	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.69E-17	44	98	No hit	No description
SMART	SM00353	2.3E-13	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MARSAKGHQD EFDDDDEEEL LTANNTSSKV KVDEPSTGKR VNPQRSKHSE TEQRRRSKIN 60 ERFQVLRDLI PQNDQKRDKA SFLLEVIEYI QFLQEKLQIY EQTYEGWNQE PTKLTPWRNN 120 HGPAENTTDP SQATQNGSVD EKNNNVSPLL PKNVQNPIES DFSMTTIQKG NIPGSTTEAV 180 PLPMQMRLDM FDPVVSSSMA TQHLLEPVSN VNMLSHTQPQ LWLDKRNKGN YILPHNDTMK 240 EQEELVNESG SDSISSAYSQ GILDSLTQAL HSSGVDMSQT NVSVQIDVGR QENAGLIPSA 300 STSKGHENQS VSNPAIARSG VDYCNIDSEQ SSKRLRQEAS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23708	0.0	cotyledon\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G275400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031127	0.0	KT031127.1 Glycine max clone HN_CCL_217 bHLH transcription factor (Glyma18g51080.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240051.1	0.0	transcription factor BIM2-like
Refseq	XP_028211977.1	0.0	transcription factor BIM2-like
TrEMBL	A0A445FYY5	0.0	A0A445FYY5_GLYSO; Transcription factor BIM2
TrEMBL	C6THG7	0.0	C6THG7_SOYBN; BHLH transcription factor
STRING	GLYMA18G51080.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82
Representative plant	OGRP1360	17	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-59	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Glyma.18G275400.1.p
Entrez Gene	100792653

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]