PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 259aa MW: 29973.7 Da PI: 6.4043

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G273400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll ++v G g+W+++a++ g++R +k+c++rw +yl Glyma.18G273400.1.p 16 KGPWTGEEDKLLSEYVCFNGEGRWSSVAQCTGLKRNGKSCRLRWVNYL 63 79****************************9***********97 PP
2	Myb_DNA-binding	43.8	5.9e-14	73	113	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E +++++++ +G++ W+tIa++++ gRt++++k++w+++ Glyma.18G273400.1.p 73 TPIEVGIIIELHAIFGNK-WSTIAKYLP-GRTDNDIKNYWRTH 113 66666789********.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-19	11	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.055	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-28	14	110	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-11	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-13	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.51E-8	18	63	No hit	No description
PROSITE profile	PS51294	21.138	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-22	67	116	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-12	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	5.0E-12	70	113	IPR001005	SANT/Myb domain
CDD	cd00167	5.26E-9	73	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEAMMGSLAT EKEWRKGPWT GEEDKLLSEY VCFNGEGRWS SVAQCTGLKR NGKSCRLRWV 60 NYLRPGLKRG QLTPIEVGII IELHAIFGNK WSTIAKYLPG RTDNDIKNYW RTHFEKSGKS 120 KHKKLEMQKA KVLKQLKQKQ QPQEYDVKSI KSHEETKNET KSYETENNKQ KEVDFMCPTM 180 EHQYIVPSMH EGFSSTWPDT VLGDDGSWFS LWDFDDEPQC SADYVNQFSE SVVPNQATFG 240 VGEDSMQNHD KIFYFDDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-22	16	116	27	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269\|PubMed:19529828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G273400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028212324.1	0.0	transcription factor WER-like
Swissprot	Q9C9G7	1e-47	MYB62_ARATH; Transcription factor MYB62
TrEMBL	A0A0R0FDV0	0.0	A0A0R0FDV0_SOYBN; Uncharacterized protein
STRING	GLYMA18G50891.1	1e-164	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	7e-63	myb domain protein 121

Link Out ? help Back to Top
Phytozome	Glyma.18G273400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]