PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 232aa MW: 26672.2 Da PI: 9.7073

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G262000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.4e-17	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed+ll d+v+++G g W++++++ g++R++k+c++rw++yl Glyma.18G262000.1.p 9 KGAWSQFEDDLLRDCVNLHGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	44.3	4e-14	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + ++E +l ++++k+lG++ W++Ia +++ gRt +++k++w+ y+ Glyma.18G262000.1.p 62 RGDFNEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNAYM 107 7899****************.*****.**********886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.926	4	56	IPR017930	Myb domain
SuperFamily	SSF46689	7.99E-27	6	103	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-13	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	9	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-20	10	63	IPR009057	Homeodomain-like
CDD	cd00167	1.50E-8	11	56	No hit	No description
PROSITE profile	PS51294	23.963	57	111	IPR017930	Myb domain
SMART	SM00717	2.5E-13	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-12	62	106	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-22	64	111	IPR009057	Homeodomain-like
CDD	cd00167	1.54E-8	65	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEGSSGVRKG AWSQFEDDLL RDCVNLHGEG KWHLVPQRAG LNRCRKSCRL RWLNYLKPNI 60 KRGDFNEDEV DLMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNAYMRRK VHSHNKDNKI 120 KKQETKSTVK PHEVIKPIPR VLTKTSPWLQ RKFINSPKVG VSEEGATSSE NWWETLLADK 180 EDNAVFNNNN NTCFFGGVHG ELNLWNEELT SIDFDFVTQG ELGGIVNFQN P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-22	3	113	1	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G262000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB934280	1e-47	AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark.
GenBank	AB934281	1e-47	AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006602928.1	1e-172	transcription factor MYB114
Swissprot	Q9FNV9	2e-54	MY113_ARATH; Transcription factor MYB113
TrEMBL	I1N4F9	1e-170	I1N4F9_SOYBN; Uncharacterized protein
STRING	GLYMA18G49690.1	1e-171	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-56	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Glyma.18G262000.1.p
Entrez Gene	100792465

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]