PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G261700.1.p
Common NameGLYMA_18G261700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 190aa    MW: 21797.8 Da    PI: 10.4963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G261700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13956148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed+ll  +v+++G g W++++++ g++R++k+ ++rw++yl
  Glyma.18G261700.1.p  9 KGAWTKCEDDLLRACVQLYGEGKWHLVPQRAGLNRCRKSRRLRWLNYL 56
                         79********************************************97 PP
2Myb_DNA-binding40.85.1e-1362107148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg  +++E +  ++ +k+lG++ W++Ia +++ +Rt +++k++w++y+
  Glyma.18G261700.1.p  62 RGDLSEDEVDMMIRMHKLLGNR-WSLIAGRLP-RRTSNDVKNYWNTYM 107
                          6677999***************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774156IPR017930Myb domain
SuperFamilySSF466894.87E-246103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-18659IPR009057Homeodomain-like
SMARTSM007174.5E-9858IPR001005SANT/Myb domain
PfamPF002496.6E-12956IPR001005SANT/Myb domain
CDDcd001672.11E-61156No hitNo description
PROSITE profilePS5129423.02557111IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2160111IPR009057Homeodomain-like
SMARTSM007176.2E-1261109IPR001005SANT/Myb domain
PfamPF002492.6E-1162106IPR001005SANT/Myb domain
CDDcd001672.58E-866107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEGPSGVRKG AWTKCEDDLL RACVQLYGEG KWHLVPQRAG LNRCRKSRRL RWLNYLKPNI  60
KRGDLSEDEV DMMIRMHKLL GNRWSLIAGR LPRRTSNDVK NYWNTYMRRK VYSHKKDNNV  120
EKQAEAKSTV KHHEVIKPVP RTLSKTSPWL QGKFFNSSKV GASGEGATSI SGSGNWWETL  180
LDDKEDNEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2131111108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G261700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533529.11e-116transcription factor MYB75
RefseqXP_028248338.11e-116transcription factor MYB75-like
SwissprotQ9FNV91e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0R0F4D41e-137A0A0R0F4D4_SOYBN; Uncharacterized protein
STRINGGLYMA18G49670.21e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]