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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G259100.2.p | ||||||||
Common Name | GLYMA_18G259100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 28187.3 Da PI: 5.1599 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9.2e-11 | 3 | 36 | 13 | 48 |
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++ +lG++ W++Ia++++ Rt++++k++w+++l Glyma.18G259100.2.p 3 IHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 36 667789****.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.824 | 1 | 40 | IPR017930 | Myb domain |
CDD | cd00167 | 2.04E-7 | 1 | 36 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 1 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-10 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-9 | 2 | 36 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MIIHLQDLLG NRWAAIASYL PQRTDNDIKN YWNTHLRKKL KKMQVGCEGG SFGEGFSASR 60 QIPRGQWERR LQTDIQMAKR ALSEALSPEK PSCNLSASNS NPSDSSSSFS STKPTTTQTV 120 CYASSADNIA RMLKGWMKNP PKSSRTNSSS VTQNSFNNFA AAGADTASSI GAKGPPSSAE 180 LSENNFESLF DFDQSLESSN SDEFSRSLSP EATVLQDESK PDVIGAEIMP FSLLEKWLLD 240 EAGCQEKLVG CGDDAKFF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20427 | 0.0 | leaf| seed coat| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G259100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093784 | 0.0 | BT093784.1 Soybean clone JCVI-FLGm-24M4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240154.1 | 0.0 | MYB transcription factor MYB60 | ||||
TrEMBL | A0A0R0F4C8 | 0.0 | A0A0R0F4C8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G49360.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-47 | myb domain protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G259100.2.p |