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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G256500.1.p | ||||||||
Common Name | GLYMA_18G256500, LOC100780402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 542aa MW: 59177.4 Da PI: 7.6082 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.5e-30 | 191 | 250 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Glyma.18G256500.1.p 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCAEDLSILITTYEGTHNHP 250 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-31 | 177 | 250 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-27 | 184 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.014 | 186 | 252 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-36 | 191 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 192 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MSKMSSPNGP EIEEKRVTKE DKFKSAKTEM GEVKEENERL KMMLERVEKD YHSLQLRFFD 60 ILHKDVSKKG LAVSSTSLDH ETAEPELVSL CLGRSPMEPK KELARIGYSN KPKEEDVGPN 120 LTLGLDSKHL LSMEVVSDLS PTNSSEEPKE VEAEGTNQSA KVINVNDDVS DQMPAKRARV 180 SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PTCPVRKQVQ RCAEDLSILI 240 TTYEGTHNHP LAVSATAMAS TTSAAASMLL SGSSTSHLTS HNSASFGNAP TTLLNGVSFS 300 HQFDELRAKQ MLSPPNHVSP NLFSTITLDM TSSASNSSSS TQFHHRLPST IASISNPKFS 360 PASLSFCSQD NNFIPSIWGK GGDTSTTPID KIPMTRPVIK GNQYFQENFY QQSITKQTPS 420 KEALAETITK AISTDPSLRS VIAAAVSSIV GNGSSSGNQE ESDNVLGSGL NLKLGEHFQL 480 ASPNPLNQNR KECLTSYFKS LSSKNSEAGS FIFLQPPLPF SFSKSSTNQV NHYVQEMNSH 540 H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-19 | 178 | 251 | 1 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G256500.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551724.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | K7MUR0 | 0.0 | K7MUR0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G49140.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 4e-66 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G256500.1.p |
Entrez Gene | 100780402 |