PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 203aa MW: 22467.1 Da PI: 7.5998

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G252300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.3	6.1e-21	76	126	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg+++t+e+Aa a+++a+ k++g Glyma.18G252300.1.p 76 HYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYDTEEKAALAYDKAAFKMRG 126 8******.*******9998..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.180.10	9.7E-5	22	88	IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDD	cd00018	9.77E-32	75	136	No hit	No description
PROSITE profile	PS51032	24.474	76	134	IPR001471	AP2/ERF domain
Pfam	PF00847	2.7E-15	76	126	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-39	76	140	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-24	76	135	IPR016177	DNA-binding domain
PRINTS	PR00367	1.6E-13	77	88	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-33	89	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-13	116	136	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVSATVDSDF AFLESVQQYL LGHDSINLMS ETHQAASHDP FSDPNKCDGD SGNIAFRSED 60 ATAVVARDHA PPTWKHYRGV RRRPWGKFAA EIRDPKKNGA RVWLGTYDTE EKAALAYDKA 120 AFKMRGQKAK LNFPHLIDSD NSDELSEPVM MTTSKRSLLE ISSPSSSCSD DSSESQGTKR 180 RKSLAELLNK LAKNRSQVKV EC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-32	75	139	4	68	ATERF1
3gcc_A	6e-32	75	139	4	68	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.68	0.0	cotyledon\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269\|PubMed:7756828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G252300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF357211	0.0	AF357211.1 Glycine max ethylene-responsive element binding protein 1 (EREBP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237801.1	1e-151	ethylene-responsive element binding protein 1
Refseq	XP_028213004.1	1e-151	ethylene-responsive transcription factor 2-like
Swissprot	Q40479	9e-38	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A445FW74	1e-149	A0A445FW74_GLYSO; Ethylene-responsive transcription factor 2
TrEMBL	Q8LLR3	1e-149	Q8LLR3_SOYBN; Ethylene-responsive element binding protein 1
STRING	GLYMA18G48730.1	1e-150	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	3e-36	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Glyma.18G252300.1.p
Entrez Gene	548037

Publications ? help Back to Top
Mazarei M,Puthoff DP,Hart JK,Rodermel SR,Baum TJ Identification and characterization of a soybean ethylene-responsive element-binding protein gene whose mRNA expression changes during soybean cyst nematode infection. Mol. Plant Microbe Interact., 2002. 15(6): p. 577-86 [PMID:12059106] Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]