PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G241300.1.p
Common NameGLYMA_18G241300, LOC100785411
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 427aa    MW: 46913.7 Da    PI: 7.8979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G241300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-113965127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H+p
  Glyma.18G241300.1.p 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65
                         5789*********************97 PP
2zf-CCCH382.7e-1286110327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++C+F+H++
  Glyma.18G241300.1.p  86 QPECQYYLKTGTCKFGATCRFHHPR 110
                          799********************96 PP
3zf-CCCH38.12.5e-12132156327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+G++CkF+H++
  Glyma.18G241300.1.p 132 EPECGYYLRTGQCKFGNTCKFHHPQ 156
                          799********************97 PP
4zf-CCCH37.15.3e-12288312226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+f+++tG Ck+G+ C+F+H+
  Glyma.18G241300.1.p 288 DQPECQFYMKTGDCKFGAVCRFHHP 312
                          689*********************8 PP
5zf-CCCH38.12.5e-12333359127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF H++
  Glyma.18G241300.1.p 333 PGEPLCVFYSRYGICKFGPSCKFDHPM 359
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763966IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-44464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25383111IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-683110IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-986110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-589110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.253129157IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5129156IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10132156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6132157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4135155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38286314IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5286313IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8288312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4292314IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821332360IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4337357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFDAAIPVS REHLPQDAMW QINLRSSETM ESEPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVA  120
LNILGYPLRP NEPECGYYLR TGQCKFGNTC KFHHPQPNNM VLSMRSSPVY PTVHSPTTPG  180
HQSYATGITN WSSSSYIPSP RWQGPSSYAP LILPQGMVSV SGWSAYSGQM GSDSPQQTMA  240
NGQSYGTSRQ SEPANSGSQG AYSQFRSGSV PVGFYALQRE NIFPERPDQP ECQFYMKTGD  300
CKFGAVCRFH HPHERMIPAP DCVLSPIGLP LRPGEPLCVF YSRYGICKFG PSCKFDHPMG  360
VFTYNMSASP LADAPGRRML GSSSGTSALN LSSEGLVESG SANPRRLSLS ETRQIPSGDD  420
NIDEEG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.65140.0cotyledon| leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G241300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626504.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_028213695.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A445FWS90.0A0A445FWS9_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform B
TrEMBLI1N3Y40.0I1N3Y4_SOYBN; Uncharacterized protein
STRINGGLYMA18G47660.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-180zinc finger protein 1