PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G237700.2.p | ||||||||
Common Name | GLYMA_18G237700, LOC100791774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 308aa MW: 35124.9 Da PI: 10.2795 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E++++++a +++ + Wk+I + +g +t q++s+ qky Glyma.18G237700.2.p 39 RENWTDQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-16 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.797 | 34 | 88 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 37 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-17 | 37 | 86 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.6E-11 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-11 | 39 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.11E-8 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MVSLNLNPNP PQTFHFFDPF NMEDQNKKVR KPYTITKSRE NWTDQEHDKF LEALHLFDRD 60 WKKIEAFVGS KTVIQIRSHA QKYFMKVQKN GTSEHVPPPR PKRKAAHPYP QKASKNALTI 120 SQVARPLQSS SALSESSHIY RPDSSSVVRT PVSSVPLPSW VYNVTPPVSL PRVTKDDMVM 180 MSQQINPFSS SNESTPRGWP ISKQTDQGDQ GKPTIVMPDF AQVYSFIGTV FDPNAINHLQ 240 RLKQMDPINV KTVLLLMRNL STNLRSPEFE NERRMLSLYY ANMEKEKSSS HRSQPLTDRS 300 ESVVLSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G237700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 8e-53 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551672.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 1e-95 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | I1N3U7 | 0.0 | I1N3U7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA18G47230.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01280.1 | 8e-77 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G237700.2.p |
Entrez Gene | 100791774 |
Publications ? help Back to Top | |||
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