PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G232400.1.p
Common NameGLYMA_18G232400, LOC100805560
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BES1
Protein Properties Length: 705aa    MW: 78838.5 Da    PI: 5.1931
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G232400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822146.22.8e-45802191133
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaags 84 
                          gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   + +kp    ++  +  s
  Glyma.18G232400.1.p  80 GGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQVQKPAggnSTIVTSSS 169
                          5899*****************************************************************965556666674333344445 PP

               DUF822  85 sasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133
                          s+ as+++++  ++ ++s  +sp+e  ++++ks+ +p ps +   s++ +
  Glyma.18G232400.1.p 170 SHAASQQTPSAsLRGVASGYRSPLEYNACQTKSVFMPTPSPYGLSSSSRS 219
                          55588888877788999**********************99877766543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-4181224IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.0E-180263700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.4E-196264698IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-101270689IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65301315IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65322340IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65344365IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.7E-6427436IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.8E-65437459IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65510529IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65544560IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65561572IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65579602IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.8E-65619641IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.7E-6670684IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.7E-6685699IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MATDMQRLVG TSEDDEEMGM DVKDEDDDDD DYEENGGEQG NASVSGMVEI DGGNGIGTAT  60
DDNRFQQHQQ FQEQVGTPGG GTRRSRPLEE KERTKLRERR RRAITARILA GLRRHGNYNL  120
RVRADINDVI AALAREAGWV VLPDGTTFPS RSQVQKPAGG NSTIVTSSSS HAASQQTPSA  180
SLRGVASGYR SPLEYNACQT KSVFMPTPSP YGLSSSSRSQ TSMVGDGEAQ RDNRPLIGGS  240
MDNADDKQIA DLPPRLPERD LAGTPYVPVY VMLPLGVINI KCELVDPDGL LKQLKVLKSV  300
HVDGVMVDCW WGIVEAHAPQ EYNWNGYKRL FQMVRELKLK LQVVMSFHEC GGNFGDDVCI  360
PLPHWVAEIG RSNPDIFFTD REGRHNPECL SWGIDKERVL RGRTALEVYF DFMRSFRVEF  420
DEYFEDGLIS MIEVGLGPCG ELRYPSCPVK HGWRYPGIGE FQCYDQYMLK SLRKAAEVRG  480
HAIWARGPDN AGTYNSQPHE TGFFCDGGDY DGFYGRFFLS WYSQVLIDHG NRVLSLAKLA  540
FEGSCIAAKL SGIYWWYKTA SHAAELTAGY YNPCNRDGYA AIMTMLKTNG INLNIPCVDL  600
HTLNQHEGFP ETFADPEGLV WQVLNAGWEV DLPVTSQNGF PCLNRVGYNK VLDNAKPMND  660
PDGRHFSSFT YLRLSSLLME RQNFIEFERF VKRMHGEAVL DLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-14726669711444Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.438480.0cotyledon| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G232400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-179AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552392.10.0beta-amylase 7
RefseqXP_014626460.10.0beta-amylase 7
RefseqXP_028214294.10.0beta-amylase 7-like
RefseqXP_028214295.10.0beta-amylase 7-like
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLI1N3P80.0I1N3P8_SOYBN; Beta-amylase
STRINGGLYMA18G46630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]