PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G230600.1.p
Common NameGLYMA_18G230600, LOC100800408
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 317aa    MW: 35239.1 Da    PI: 7.5779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G230600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l  ++k+ Gg+ +W++ +r+ g+ R++k+c++rw +yl
  Glyma.18G230600.1.p 14 KGPWTAEEDEILSSYIKKNGGHgSWRSLPRMAGLLRCGKSCRLRWTNYL 62
                         79*******************9***********99************97 PP
2Myb_DNA-binding482.9e-1568113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Glyma.18G230600.1.p  68 RGPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-22565IPR009057Homeodomain-like
PROSITE profilePS5129415.648962IPR017930Myb domain
SuperFamilySSF466897.11E-2811109IPR009057Homeodomain-like
SMARTSM007179.3E-121364IPR001005SANT/Myb domain
PfamPF002498.3E-141462IPR001005SANT/Myb domain
CDDcd001672.41E-81662No hitNo description
PROSITE profilePS5129424.53963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2566118IPR009057Homeodomain-like
SMARTSM007173.0E-1467115IPR001005SANT/Myb domain
PfamPF002494.0E-1468113IPR001005SANT/Myb domain
CDDcd001672.58E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTAE EDEILSSYIK KNGGHGSWRS LPRMAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTLEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLKSM  120
GLDPKTHEPL ASSTYPFHKA PASVSTRHMA QWESARLEAE ARLSNESSRF SHNTTNNSNS  180
DNNKTTDSDY FLRIWNSEVG EAFRNVHHHK ADDDNNNNKI TTNTPTSSCH SPLSTGSSSN  240
KCESIATNAD LASNAPEIIT PSSIVKQEFE WGTRGSDSSS SNDMEDSSDT ALQLLLDFPI  300
NNDMSFLEGN SFVCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26121175108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G230600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-121AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552382.10.0transcription factor MYB41
RefseqXP_028213721.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-121MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0B2NV940.0A0A0B2NV94_GLYSO; Myb-related protein Pp2
TrEMBLA0A0R0FBM80.0A0A0R0FBM8_SOYBN; Uncharacterized protein
STRINGGLYMA18G46480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-112myb domain protein 17