PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27753.8 Da PI: 8.9566

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G224300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.3e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+ KKA+ELSvLCdaeva++ifs +gk ++++ Glyma.18G224300.1.p 9 KRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFP 58 79*********************************************998 PP
2	K-box	85.9	8e-29	82	169	10	97
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e +++ ++qe+ kL+++ e+Lqr+qR l GedL++Ls+keL Le+qLek+l++ R++K++l+++q+eel++ke+ l++ nk+Lr k Glyma.18G224300.1.p 82 IELENQDWYQEMLKLNEKCESLQRTQRLLHGEDLGPLSIKELLILEEQLEKALSQARQRKTQLMIKQMEELRQKERHLEDLNKELRLK 169 466789*******************************************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.6	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.63E-38	2	74	No hit	No description
SuperFamily	SSF55455	1.07E-31	2	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.0E-25	85	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.706	86	180	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLVK KAKELSVLCD AEVALVIFSA RGKPFTFPDD 60 AESIMKTYDR YRKYYSHQHG NIELENQDWY QEMLKLNEKC ESLQRTQRLL HGEDLGPLSI 120 KELLILEEQL EKALSQARQR KTQLMIKQME ELRQKERHLE DLNKELRLKP PFQLEPYGFN 180 LKASLWGSTS SADGDGSFPL QPSLTYPEPF LQIGYSVQGE PSIVPKSMAS ETNFQGWFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	1e-18	82	169	16	100	Developmental protein SEPALLATA 3
4ox0_B	1e-18	82	169	16	100	Developmental protein SEPALLATA 3
4ox0_C	1e-18	82	169	16	100	Developmental protein SEPALLATA 3
4ox0_D	1e-18	82	169	16	100	Developmental protein SEPALLATA 3
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G224300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003551643.1	1e-177	agamous-like MADS-box protein AGL6 isoform X1
Refseq	XP_028212482.1	1e-177	agamous-like MADS-box protein AGL6
Swissprot	Q8LLR1	8e-91	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A445FXR0	1e-176	A0A445FXR0_GLYSO; Agamous-like MADS-box protein AGL6
TrEMBL	K7MU29	1e-176	K7MU29_SOYBN; Uncharacterized protein
STRING	GLYMA18G45761.1	1e-177	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF229	32	178
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	5e-71	AGAMOUS-like 6

Link Out ? help Back to Top
Phytozome	Glyma.18G224300.1.p
Entrez Gene	100813753

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]