PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G220100.2.p
Common NameGLYMA_18G220100, LOC100806779
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 665aa    MW: 72612.6 Da    PI: 6.4792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G220100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.57.7e-1262986532374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavss++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++
  Glyma.18G220100.2.p 298 LTLLLQCAEAVSSENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFV 383
                          579*********************************************************999988885....89999************ PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Glyma.18G220100.2.p 384 KFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFP- 468
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l++e+L+v + Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl
  Glyma.18G220100.2.p 469 VAEKVGNLDPERLNVCKTEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NTGSFLGRFVEAIHYYSALFDSL 551
                          7*************************9..999999999999....*******************97.699******************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           +++++eseer++vE++ll+rei+nv+a  g +r+ + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lg
  Glyma.18G220100.2.p 552 GSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLG 640
                          *********************************998887.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Glyma.18G220100.2.p 641 WKDLCLLTASAWR 653
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.074271633IPR005202Transcription factor GRAS
PfamPF035142.7E-123298653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MLLPSSTTTT INSSGVAPNY ITHHQHHHFQ GLVESQDHQQ NPVPAVCGFS GLPLFPSQSQ  60
RNRDSNNTPT TNNIRNSGGN IVDVVASSSS SSSMDDTSAA AATSGWIDGI LKDLIHSSNS  120
VSIPQLISNV REIIYPCNPN LAMVLEYRLR LLLTESTTQN KRGTEGVPLP PSVSSVKLTS  180
NRVVDGIVPN LHFTDASGGA VVVNQHMLSN WGVPQITHHH DNNTNTNTNN SNNPSVSLVT  240
LPSPTPPLPP PHYSPPQEKH PQEEDLAATS TAEVALSRKK KEELREQKKK DEEGLHLLTL  300
LLQCAEAVSS ENLEDANKML LEISQLSTPF GTSAQRVAAY FSEAISARLV SSCLGIYATL  360
PHTHQSHKVA SAFQVFNGIS PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL  420
FHILASRPGG APYVRLTGLG TSMEALEATG KRLSDFANKL GLPFEFFPVA EKVGNLDPER  480
LNVCKTEAVA VHWLQHSLYD VTGSDTNTLW LLQRLAPKVV TVVEQDLSNT GSFLGRFVEA  540
IHYYSALFDS LGSSYGEESE ERHVVEQQLL SREIRNVLAV GGPSRTGEPK FHNWREKLQQ  600
CGFRGISLAG NAATQASLLL GMFPSEGYTL VEDNGILKLG WKDLCLLTAS AWRPPFHSAI  660
THHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02806543380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194900.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot apical meristem, leaf primordia, between the cortex and the differentiating vessels in lower shoots and in root endodermis. {ECO:0000269|PubMed:11333309}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G220100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551631.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLK7MTY70.0K7MTY7_SOYBN; Uncharacterized protein
STRINGGLYMA18G45220.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein