|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.18G202400.1.p |
Common Name | GLYMA_18G202400, LOC100794230 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
Trihelix |
Protein Properties |
Length: 293aa MW: 34911.4 Da PI: 7.4212 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.18G202400.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 80.3 | 2.8e-25 | 36 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+ qe+++ + +r e+++++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk ++++e + ++++p++++l+
Glyma.18G202400.1.p 36 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 118
7********************************************************************95...56689*****98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MEGHHLHHRQ QQLQQHHHPH HNITTSNVDA TDRFPQWSIQ ETKEFLVIRA ELDQTFMETK 60 RNKQLWEVIS NRMKEKGFHR SAEQCKCKWK NLVTRYKGCE TMEPEAMRQQ FPFYNELQAI 120 FAARMQRMLW AEAEGGSNNK KKGMHLSSDD EEEGNEEMMS EGDHKGNIII SKKNKKKGKM 180 VIGVGGSGNN NNNSSSSSNN LESLKEIMDE FMRQQMQMEA QWMEAFEARE NERRLKEMEW 240 RQTMEALENE RLMMDQRWRE REEQRRIREE VRADKRDALI TALLNKLRRE EM*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015037 | 1e-103 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |