PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G186000.1.p
Common NameGLYMA_18G186000, LOC100814816
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 304aa    MW: 34347.5 Da    PI: 8.369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G186000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C  C k F++   L  H+++H
  Glyma.18G186000.1.p 56 YSCRFCRKEFRSAQALGGHMNVH 78
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-65382No hitNo description
PROSITE profilePS5015711.245683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEGHCWIKT KRKYSINSSI DSPTNYPSSY DDYSWEEQAF AKDAAWSGCI WPPRSYSCRF  60
CRKEFRSAQA LGGHMNVHRR DRARLKQPYS PDQNEILSDG LEKTTQQQSS VQISFTSLGY  120
LYPSSLDGLA PNTSPNSDPY SHAPASPSKF LASSINKRGR EKPQIPLYKG CLESSPDLPS  180
KSMSNLTEDF RFCSRRLDPE AGVEKMLKGL DSGCRSTERD DAKTDVAVIL NLFMNQPHPP  240
VKFETKEKYT SFKKGKADAS SIPFFPKSCS ADRHHMQSQM YEFSPSSIEE LDLELRLGYR  300
SKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-115178229superman protein
2l1o_A1e-115178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G186000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992220.0BT099222.1 Soybean clone JCVI-FLGm-16J22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551492.10.0zinc finger protein 10
TrEMBLA0A445FUT60.0A0A445FUT6_GLYSO; Putative transcriptional regulator RABBIT EARS
TrEMBLI1N2L20.0I1N2L2_SOYBN; Uncharacterized protein
STRINGGLYMA18G40370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.18e-24C2H2 family protein