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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.18G184500.2.p | ||||||||
Common Name | GLYMA_18G184500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 623aa MW: 69758.9 Da PI: 6.3726 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 119 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF Glyma.18G184500.2.p 119 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFL-- 206 99****************************9555555679************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r Glyma.18G184500.2.p 207 RGNNGELRVGVRR 219 3489999****98 PP | |||||||
2 | Auxin_resp | 90.8 | 2.3e-30 | 245 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pra s+F+v+v+k+++a+++k+ vGmRfk +fe+++s+e +r+sGt+vgv+d++p +W nS+WrsLk Glyma.18G184500.2.p 245 ASHAVATQTLFVVYYKPRA--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPEnyKRFSGTIVGVEDISP-HWVNSNWRSLK 326 789***************8..9********************************9844578**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.45E-38 | 110 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-38 | 112 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-20 | 117 | 219 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 119 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-22 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-22 | 119 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.7E-29 | 245 | 326 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.5E-8 | 444 | 548 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.028 | 512 | 593 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.4E-13 | 515 | 588 | No hit | No description |
Pfam | PF02309 | 6.6E-6 | 558 | 599 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP 60 LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC 120 KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR 180 RHLLTTGWSN FVTSKRLVAG DTFVFLRGNN GELRVGVRRI APVQSSMPSS VISSQSMHLG 240 VLATASHAVA TQTLFVVYYK PRASQFIVSV NKYLEAINQK CNVGMRFKTR FEGDESPENY 300 KRFSGTIVGV EDISPHWVNS NWRSLKVQWD EPASFPRPDR VLPWEIEPIL ASVPTTSSQT 360 AAIKNKRPRQ ASELADLGDT PLAFPTFWDA GLTQSDMAKL SVMAEIKRSD SSSHMWHHNS 420 KSSNNGISMN QTEVDKEINK VEAATSYRLF GIDLIDHARN NSLSAENASG ITSECKIDVN 480 HVSDISKASK EWNQEQLQLS PKETQSKQVC SRSCTKVQMQ GVAVGRAVDL TTLDGYDQLV 540 DELEKMFDIK GQLQLRNKWE IVFTDDEGDM MLVGDDPWLE FCKMVRRIFI YSSQDVHKLS 600 SGSKLPISSM EEIVTSLDTT ET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 2 | 349 | 7 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 2 | 349 | 7 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 2 | 349 | 7 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34907 | 0.0 | leaf| meristem| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.18G184500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-79 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003552183.1 | 0.0 | auxin response factor 9 isoform X1 | ||||
Refseq | XP_028214238.1 | 0.0 | auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0R0F9P6 | 0.0 | A0A0R0F9P6_SOYBN; Auxin response factor | ||||
STRING | GLYMA18G40180.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.18G184500.2.p |