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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.18G184500.1.p |
| Common Name | GLYMA_18G184500, LOC100780060 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
ARF |
| Protein Properties |
Length: 665aa MW: 74553 Da PI: 6.2689 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.18G184500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 76.6 | 2.7e-24 | 119 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW++Fv +++L +gD++vF
Glyma.18G184500.1.p 119 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFL-- 206
99****************************9555555679************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ +++el+v+v+r
Glyma.18G184500.1.p 207 RGNNGELRVGVRR 219
3489999****98 PP
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| 2 | Auxin_resp | 90.7 | 2.6e-30 | 245 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha++t++ F v+Y+Pra s+F+v+v+k+++a+++k+ vGmRfk +fe+++s+e +r+sGt+vgv+d++p +W nS+WrsLk
Glyma.18G184500.1.p 245 ASHAVATQTLFVVYYKPRA--SQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPEnyKRFSGTIVGVEDISP-HWVNSNWRSLK 326
789***************8..9********************************9844578**********99.*********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 665 aa
Download sequence Send
to blast |
MSLNRGGGGE EDELYEQLWK ACAGPHVEVP RTGQRVFYFP QGHMEQLEVS TNQELNQRIP 60
LFKLPSKILC RVVNVHLLAE QETDEVYAQI TLVPESNQAE PMSPDPCPAE LPSPRVHSFC 120
KVLTASDTST HGGFSVLRKH ATECLPALDM SKSTPTQELV AKDLQGYEWR FKHIFRGQPR 180
RHLLTTGWSN FVTSKRLVAG DTFVFLRGNN GELRVGVRRI APVQSSMPSS VISSQSMHLG 240
VLATASHAVA TQTLFVVYYK PRASQFIVSV NKYLEAINQK CNVGMRFKTR FEGDESPENY 300
KRFSGTIVGV EDISPHWVNS NWRSLKVQWD EPASFPRPDR VLPWEIEPIL ASVPTTSSQT 360
AAIKNKRPRQ ASELADLGDT PLAFPTFWDA GLTQSDMAKL SVMAEIKRSD SSSHMWHHNS 420
KSSNNGISMN QTEASWLSSP SQLYHDTTDD SKSISAWPIS KPHSERLNND HFLDQVDKEI 480
NKVEAATSYR LFGIDLIDHA RNNSLSAENA SGITSECKID VNHVSDISKA SKEWNQEQLQ 540
LSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQLRNK 600
WEIVFTDDEG DMMLVGDDPW LEFCKMVRRI FIYSSQDVHK LSSGSKLPIS SMEEIVTSLD 660
TTET*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015037 | 1e-142 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
