PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G182400.2.p
Common NameGLYMA_18G182400, LOC100801280
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 604aa    MW: 67340.8 Da    PI: 9.7671
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G182400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-08511560147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
  Glyma.18G182400.2.p 511 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 560
                          567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.6E-6318411IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.674506565IPR017930Myb domain
SMARTSM007171.6E-7510563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10511561IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15512593IPR009057Homeodomain-like
CDDcd116606.35E-17512562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MVLQKRLNYG FNGYQVPVIP RASRSARGRG TIRKKPDSSQ IQAFEILASV AGNFLQENES  60
SNPENVVLAK DPRTLSGTNI KDKHGDERSF KGALFEHGAC SEIASVFVPS MQGKHDNHRV  120
MGDSSFLDNH LEGQGQNVPE REDERIKGRS VNGKTIHIKG CSNGLIEPGH GVSKHCSSAN  180
NVEKPSLEGR KPLDSFPKCF TSRKLVNRDD DETLDRCTQL NSKNNTSGAP PDTPKLKDAS  240
PFISDENNSR DISELESLQR MYPFKKRKFF NQTSSSASDR GSQCQGMFDS SDTIRVNGTN  300
HAIEESSSIV GQQAHFGSRG CNVKLSIKSF KVPELFIDIP ETATIGSLKR TVMEAVTAIL  360
GDELHVGILL QGKKVRDDSK TLIQTGISQD DKRHRLGFML EPRHTQSPSS YNDDPCYPTT  420
SSRQKLSRQS TSVTLQQGTY NVSKERSMIK IESYAEGDLN MVTSLADTSA NNNMSKCRAL  480
VAVPAINMET LAVVPFRRKS ENPDFAQRRI RRPFSVLEVE ALVQAVEKLG TGRWRDVKQR  540
AFDHAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLAAHAY WSQQQCKHQL  600
KPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-554956031109Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258267QRMYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G182400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063621e-114AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551477.10.0telomere repeat-binding protein 5
RefseqXP_006602594.10.0telomere repeat-binding protein 5
RefseqXP_028212818.10.0telomere repeat-binding protein 5-like
RefseqXP_028212819.10.0telomere repeat-binding protein 5-like
TrEMBLA0A0B2Q2G00.0A0A0B2Q2G0_GLYSO; Telomere repeat-binding protein 2
TrEMBLK7MT460.0K7MT46_SOYBN; Uncharacterized protein
STRINGGLYMA18G39911.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-95TRF-like 2