PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 563aa MW: 61957.3 Da PI: 8.4826

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G181100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8.1e-16	63	109	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Glyma.18G181100.1.p 63 KGGWTAQEDETLRNAVAVFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 109 688***************************.**********986 PP
2	Myb_DNA-binding	62.6	7.8e-20	115	161	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v ++G+ W++Ia+ ++ gR +kqc++rw+++l Glyma.18G181100.1.p 115 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 161 79****************************.***********97 PP
3	Myb_DNA-binding	50.1	6.4e-16	167	210	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ + gRt++ +k++w++ Glyma.18G181100.1.p 167 KDAWTLEEELSLMNAHRIHGNK-WAEIAKVLH-GRTDNAIKNHWNS 210 679*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.728	58	109	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-14	60	116	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	62	111	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	63	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	65	116	IPR009057	Homeodomain-like
CDD	cd00167	3.76E-12	66	109	No hit	No description
PROSITE profile	PS51294	33.151	110	165	IPR017930	Myb domain
SuperFamily	SSF46689	3.26E-31	112	208	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-18	114	163	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-19	115	161	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-28	117	164	IPR009057	Homeodomain-like
CDD	cd00167	2.18E-16	117	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-22	165	216	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-14	166	214	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.403	166	216	IPR017930	Myb domain
Pfam	PF00249	3.5E-14	167	210	IPR001005	SANT/Myb domain
CDD	cd00167	1.16E-10	169	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MKDMAEVVKS EECCQENKQS TAASCSSVSE GSGSAIHKSP AICSPASTSP SHRRTTGPIR 60 RAKGGWTAQE DETLRNAVAV FKGKSWKKIA EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ 120 EEDDKIVELV SKYGPTKWSL IAKSLPGRIG KQCRERWHNH LNPDIKKDAW TLEEELSLMN 180 AHRIHGNKWA EIAKVLHGRT DNAIKNHWNS SLKKKLDFYL ATGRLPPIPK NSPQVPVKDT 240 IRRSASKSIL GCSNKELNAA VETSSETTSI SKLDDRGRNQ FESSGTVREV GDCSSVPANE 300 SADSDCVECK PGSSNIDLSC SNSEQLSRAN FGTTFGLISE NSGINGNSNF EHCTNNGDMS 360 STRLIGTSSQ ESPTCGSLCY EPPQLDGSVP IDSLYLNYIC QQNEYCPSPT MSPIGFFTPP 420 RVKGSQLCTE TPESILKKAA NTFPNTPSIL RRRKTGAQTL TSPSKVLKVD NNPHTSKTER 480 TDDDSGSGHF SRSPASHGNG IDIPNNKAFN ASPPYRLRSK RTAIVKSVEK QLEFAFDKEK 540 NDDKRSNVMT EDRLHETKLV VT*

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MKDMAEVVKS EECCQENKQS TAASCSSVSE GSGSAIHKSP AICSPASTSP SHRRTTGPIR  60
RAKGGWTAQE DETLRNAVAV FKGKSWKKIA EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ  120
EEDDKIVELV SKYGPTKWSL IAKSLPGRIG KQCRERWHNH LNPDIKKDAW TLEEELSLMN  180
AHRIHGNKWA EIAKVLHGRT DNAIKNHWNS SLKKKLDFYL ATGRLPPIPK NSPQVPVKDT  240
IRRSASKSIL GCSNKELNAA VETSSETTSI SKLDDRGRNQ FESSGTVREV GDCSSVPANE  300
SADSDCVECK PGSSNIDLSC SNSEQLSRAN FGTTFGLISE NSGINGNSNF EHCTNNGDMS  360
STRLIGTSSQ ESPTCGSLCY EPPQLDGSVP IDSLYLNYIC QQNEYCPSPT MSPIGFFTPP  420
RVKGSQLCTE TPESILKKAA NTFPNTPSIL RRRKTGAQTL TSPSKVLKVD NNPHTSKTER  480
TDDDSGSGHF SRSPASHGNG IDIPNNKAFN ASPPYRLRSK RTAIVKSVEK QLEFAFDKEK  540
NDDKRSNVMT EDRLHETKLV VT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	9e-67	62	216	5	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-67	62	216	5	159	MYB PROTO-ONCOGENE PROTEIN
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.9260	0.0	cotyledon\| leaf\| pod\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269\|PubMed:26069325}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250\|UniProtKB:Q94FL9, ECO:0000269\|PubMed:26069325}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G181100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006602590.1	0.0	transcription factor MYB3R-3
Refseq	XP_028215488.1	0.0	transcription factor MYB3R-3-like
Swissprot	Q8H1P9	1e-156	MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBL	A0A0B2Q2F2	0.0	A0A0B2Q2F2_GLYSO; Myb-related protein 3R-1
TrEMBL	A0A368UGR2	0.0	A0A368UGR2_SOYBN; Uncharacterized protein
STRING	GLYMA18G39740.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6616	34	49
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-145	myb domain protein 3r-5

Link Out ? help Back to Top
Phytozome	Glyma.18G181100.1.p
Entrez Gene	778081

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]