PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G179400.1.p
Common NameGLYMA_18G179400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 770aa    MW: 89015.5 Da    PI: 6.536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G179400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.64.8e-14104182289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          fY  YAk +GFsvr +            ++ fvCs+ g+r+e+ ++ ++++rr+++e+r+gC+a+++v+ +  +g+w+vt  + eHnH l
  Glyma.18G179400.1.p 104 FYYWYAKITGFSVRET-----------LEQAFVCSCAGYRREKGSTsNTRKRREKKESRCGCEAMFRVHVHFsTGRWYVTCWNFEHNHLL 182
                          9************976...........4578*********9998886789999******************99***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-11104182IPR004330FAR1 DNA binding domain
PfamPF105511.8E-32303397IPR018289MULE transposase domain
PROSITE profilePS509668.704554601IPR007527Zinc finger, SWIM-type
SMARTSM005750.0073576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MASAGLRQLL LSVFIVTVVL GSVVPVSYCL DENDVGLEDE DEVDCEVQNY DYGDYDDFWI  60
PGLLKDECIS FETIVDIRQF DMEKMSVEDV SRFDFAELEL AYVFYYWYAK ITGFSVRETL  120
EQAFVCSCAG YRREKGSTSN TRKRREKKES RCGCEAMFRV HVHFSTGRWY VTCWNFEHNH  180
LLLDLKLSSL LPAHRKMSTI DIMQIENYRK VGIGPPHMYA AFANHCGGYD KVGFIRKDIY  240
NQEVRMRKQH TSDASGALKY LHDLRKKDPT MYVLYTVDEG SRLQRLFWCD TESQLLYGVF  300
GDILAFDATY KKNKYLCPFV VFSSVNHHNQ TIVFAAAIVT DETEETYVWL LEQFLEAMKG  360
KAPSSIITDG DLAMRNAITR VMPSVFHKLC AWHLLRNALS HVGDKQVLKW LKNLMLGDFE  420
VVTFEEKWKE MIATFELEDN SWIGELYEKR MKWSPAHLRG NFFAGIRTTS RCEAFHAHVA  480
KYVHSRTNLT DFVEQFQRCL TYFRYRAIVA DYFSTYENEV LQTNLRSLER STDQLLTKEM  540
FILFQSYMAT FSVYTVMKYC SESVWYVSYC PSTINFSCLC MRMQSIGLPC DHILVVLVCL  600
NFTELPSCLV LNRWSKSTTE NIKDKYPDFA IYWDSQLMAR YATLVQVSRE VCEAAYFDED  660
EYDKMLHFLS NEVRRLKSNK NSEPCIDDND EQANQQGHNY DGILDPIVVR TKGCGQVGVD  720
ESGKRRRIQK CGQCGGSGHN KCSCTNRPRN ANLMQQPHTF VAGSSRPGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RKRREK
2141148RKRREKKE
3723727KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G179400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351390.0AC235139.1 Glycine max strain Williams 82 clone GM_WBa0065P04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603498.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0R0F9G80.0A0A0R0F9G8_SOYBN; Uncharacterized protein
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-81FAR1-related sequence 5