PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.18G178200.1.p

Common Name

GLYMA_18G178200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 365aa MW: 42554.7 Da PI: 5.5515

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G178200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41	6.2e-13	80	150	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 +fY+ YA Fs+rks+ + ++ge+ ++tfvCskeg+r+++ + ++++++ ++ tr+gCk + v+ + Glyma.18G178200.1.p 80 QFYKWYAWANDFSIRKSHVLIN-KKGETLQQTFVCSKEGYRQDRGLSpRNRKHEYKNFTRCGCKVYICVHVN 150 6***************9998.6777*************99867777788999999999999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-10	80	150	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.7E-13	264	319	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEEHSISDCS NDGTFEDVHM EDDGVALRMM SLVSKVKNMC FWNEDGLDDN ECFENNVSDD 60 NELKDEEDYD NEVLNDEGYQ FYKWYAWAND FSIRKSHVLI NKKGETLQQT FVCSKEGYRQ 120 DRGLSPRNRK HEYKNFTRCG CKVYICVHVN ELIDHCGGHK HKLLNEQDCG LLSGHRKITA 180 SDAMQIENYR KVVIRPPHIY ASLAQTSGGY NKVGYVRKDI YNYFARQGRK QSSDVNRALN 240 YFHHLCPKDP MMVVAYIVDD ENRLQHLFCV NHHNNTIVFA TALVTNETEE TYVWLLEQFL 300 KEMKGKHPSS VITDGDFEIA EFDEKWNDMI TKFGLEDNNW VITLFERKQT WATTYIKGIF 360 FACI*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEEHSISDCS NDGTFEDVHM EDDGVALRMM SLVSKVKNMC FWNEDGLDDN ECFENNVSDD  60
NELKDEEDYD NEVLNDEGYQ FYKWYAWAND FSIRKSHVLI NKKGETLQQT FVCSKEGYRQ  120
DRGLSPRNRK HEYKNFTRCG CKVYICVHVN ELIDHCGGHK HKLLNEQDCG LLSGHRKITA  180
SDAMQIENYR KVVIRPPHIY ASLAQTSGGY NKVGYVRKDI YNYFARQGRK QSSDVNRALN  240
YFHHLCPKDP MMVVAYIVDD ENRLQHLFCV NHHNNTIVFA TALVTNETEE TYVWLLEQFL  300
KEMKGKHPSS VITDGDFEIA EFDEKWNDMI TKFGLEDNNW VITLFERKQT WATTYIKGIF  360
FACI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G178200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235915	0.0	AC235915.2 Glycine max clone GM_WBc0232C06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014626148.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0R0FCX3	0.0	A0A0R0FCX3_SOYBN; Uncharacterized protein
STRING	GLYMA18G38897.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-24	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.18G178200.1.p