PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G156000.1.p
Common NameGLYMA_18G156000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 1124aa    MW: 127155 Da    PI: 6.253
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G156000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.5e-12292336347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+  ++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Glyma.18G156000.1.p 292 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVTSRTPTQVTSHAQKY 336
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511265.61E-31134289IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.102.2E-18135226IPR012334Pectin lyase fold
Gene3DG3DSA:2.160.20.104.0E-14232289IPR012334Pectin lyase fold
PfamPF002951.1E-5233290IPR000743Glycoside hydrolase, family 28
PROSITE profilePS5129414.296285341IPR017930Myb domain
SMARTSM007175.7E-9289339IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9291334IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-15291339IPR006447Myb domain, plants
SuperFamilySSF466891.01E-14291341IPR009057Homeodomain-like
CDDcd001672.52E-7292337No hitNo description
PfamPF002491.8E-9292336IPR001005SANT/Myb domain
PfamPF077653.5E-4472490IPR011684Protein Networked (NET), actin-binding (NAB) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003779Molecular Functionactin binding
GO:0004650Molecular Functionpolygalacturonase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MLLLPMLSLS PSFPSLASNR YLQFRPRRSR RVFRCAAAES GDDEFTAKSG YLFELSVTKA  60
DSLGEYQIPK IAAVCSRKPL LVARRLVQTS IAFGKWFGLR YIDTLLDRSE SMFQDRECKV  120
ANGLDCFEYP AINCRKHSAV LTDFGGVGDG KTSNTKGFQY AISNLSHYAS DGGALLVVPP  180
GKWLTGSFNL TSHFTLFLQK EATILGSQDE SKWPTLPVLP SYGRGRDAPY GQGPYMIKIM  240
FFDHIQISNL TLINSLSLFV HPIYTSDIII QGLTILAPID SPNTDGIDLG VPWTEEEHRT  300
FLVGLEKLGK GDWRGISRNY VTSRTPTQVT SHAQKYFIRL ATMNKKKRRS SLFDMVGNDI  360
TNPISSSNCK SSKCEIEDDV TLSLVQLQDT KLDEQKDGDK YCEAGPAGAE HEVVPLWLHP  420
QMKSSNNNVA TVVPDLELTL AVSKGKAKTL LGLNKHKQNH PQIPSFLDQL AVNVVEEFYR  480
AYRALAERYD HATGVIRQAH HATDYKPQLR SWRSSQKKNH LLESSLFNVN SELEGLRIKS  540
KILEDSCLLF DHEKSSLTSD KEMLVSQLNI THQTLKDLGK KHKDADYQKK EFEEELDRAA  600
HAQMEIFILQ KCIQGSEQKN FSLLVESQRL LESSKLSDRL VSKLENDNVQ KQVDVNSLFE  660
KIKILRIGLL QALKTLDANS EPWCDGIIEE DQELLNHIHG KLQETQNSFL KLKVENLLTE  720
RDSLDEELRT QSKQFLTLQA EVQKILEKNQ ELKLTISKGE GKMEVMTTEI VNLCKQLLDL  780
KEDHQNIKEE SCKTFEEKNS LMKRFWDLGE EKSKLEEEIC IMIHDTIAQS NLSLLYQNIV  840
LEKLQALKEL SKDLDRLCSV NTDLEEKLKI MMGKLEDVQM ENSDLKESLI LSSNELKLVQ  900
SVNDQLNCQI RNGKELLSQK ENEILEAAKM FSTLHDEKTK LQRLVEDLKS KYDGARVILE  960
DQASQILKLS SDKDTQAATL YTRLQISTVN ETLFEEKVHE LADACEDLDR RSNFKGMESE  1020
TLKERVNKLE GENGRLHGHL AAYVPAVSAL NDCITSLEMQ TLAHANPHNY KVLKVKDLMN  1080
HKYAESGPQT GEDQNAMATD ALPGFQGLQK RISAIEMAVK QME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344348KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.359800.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G156000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604454.10.0protein NETWORKED 1D
RefseqXP_006604455.10.0protein NETWORKED 1D
RefseqXP_006604456.10.0protein NETWORKED 1D
RefseqXP_014627303.10.0protein NETWORKED 1D
RefseqXP_025982965.10.0protein NETWORKED 1D
RefseqXP_025982966.10.0protein NETWORKED 1D
RefseqXP_028216326.10.0protein NETWORKED 1D-like
RefseqXP_028216327.10.0protein NETWORKED 1D-like
RefseqXP_028216328.10.0protein NETWORKED 1D-like
TrEMBLA0A0R0F0K00.0A0A0R0F0K0_SOYBN; Uncharacterized protein
STRINGGLYMA17G18930.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-32MYB_related family protein