PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G141200.1.p
Common NameLOC100786454
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 325aa    MW: 36864.4 Da    PI: 5.0607
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G141200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-09246301355
                          --SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          kR ++ k+  ++L +  +   k +yp++ ++  LAk++gL+++q+ +WF N+R ++
  Glyma.18G141200.1.p 246 KRGKLPKDARQTLLQWWNihyKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRY 301
                          555555556666655555443679*****************************986 PP
2ELK26.51.5e-09221242122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++Llr ++++ gsLk EFs
  Glyma.18G141200.1.p 221 ELKDRLLRRFGSHVGSLKLEFS 242
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.6E-2382126IPR005540KNOX1
PfamPF037902.1E-2284125IPR005540KNOX1
SMARTSM012568.9E-28133184IPR005541KNOX2
PfamPF037914.6E-26137183IPR005541KNOX2
SMARTSM011888.9E-5221242IPR005539ELK domain
PfamPF037894.6E-6221242IPR005539ELK domain
PROSITE profilePS512139.463221241IPR005539ELK domain
PROSITE profilePS5007113.054241304IPR001356Homeobox domain
SuperFamilySSF466899.84E-20242315IPR009057Homeodomain-like
SMARTSM003891.9E-13243308IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-28246305IPR009057Homeodomain-like
CDDcd000863.94E-12253305No hitNo description
PfamPF059203.3E-17261300IPR008422Homeobox KN domain
PROSITE patternPS000270279302IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEDEIYGVSS TAEYTDRALM TPENIFPAEY HSFLMSSAAR TPMFGSDEFL SAAIAVTAGN  60
ETEPYPNVSV APEIQRHHDA SSLIKAKIAS HPHYPRLLQA YIECQKVGAP PELTCLLEEI  120
RRENDVRQRD VVVSTCVGAD PELDEFMETY CDMLVKYKSD LTRPFDEATT FLNKIETQLT  180
DLCSRSSLPT LYDDGGVSSE EGFSAGDGDP QDGQLRSEDR ELKDRLLRRF GSHVGSLKLE  240
FSKKKKRGKL PKDARQTLLQ WWNIHYKWPY PTEGDKIALA KSTGLDQKQI NNWFINQRKR  300
YWKPSENMPF SMVDGLTGRF LTDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249KKKKRGKL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G141200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552032.10.0homeobox protein knotted-1-like 6
RefseqXP_014625782.10.0homeobox protein knotted-1-like 6
RefseqXP_028213293.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-142KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A0B2PGW90.0A0A0B2PGW9_GLYSO; Homeobox protein knotted-1-like 6
TrEMBLA0A368UGQ40.0A0A368UGQ4_SOYBN; Uncharacterized protein
STRINGGLYMA18G20293.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-134KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]