PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 297aa MW: 31555 Da PI: 7.1472

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G134200.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39	1.8e-12	11	55	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++e d+ + +a + ++ + +W++Ia+ ++ g+tl+++k+++ Glyma.18G134200.9.p 11 QWSKEQDKAFENALAIHPEDasdRWEKIAADVP-GKTLEEIKHHYE 55 7******************************.********96 PP
2	Myb_DNA-binding	43.8	5.9e-14	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Glyma.18G134200.9.p 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.217	7	62	IPR017884	SANT domain
SMART	SM00717	1.7E-9	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.83E-11	10	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-5	11	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-9	11	55	IPR001005	SANT/Myb domain
CDD	cd00167	4.78E-10	12	58	No hit	No description
PROSITE profile	PS51294	17.61	114	171	IPR017930	Myb domain
SuperFamily	SSF46689	8.28E-17	117	172	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-11	119	169	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.5E-17	119	169	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.2E-11	122	165	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-12	122	166	IPR001005	SANT/Myb domain
CDD	cd00167	1.29E-10	122	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTVDEVGSSS QWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYELLVED 60 VSQIESGYVP LPSYNSSPEG STSHASEEGA GKKGGHSWNS NNESNHGTKA SRSDQERRKG 120 IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS 180 SIHDITSVNN GDVSAPQGPI TGQTNGSADN SAGKSTKPAP PAPTAALGVG IYAGPTIGQP 240 IGGPLVSAVG TPVMNLPPPA HMAYGLGAPV PGAVVPGAPM NLGPVPYPMP HTSARR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	8e-20	7	77	6	76	RADIALIS
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.27324	0.0	flower\| leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G134200.9.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096693	0.0	BT096693.1 Soybean clone JCVI-FLGm-25B10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001240091.1	0.0	putative R1/2-type MYB transcription factor
Refseq	XP_006601855.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625723.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625724.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625725.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625726.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625727.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625728.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_014625729.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_025982393.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_025982394.1	0.0	putative R1/2-type MYB transcription factor isoform X1
Refseq	XP_028214153.1	0.0	transcription factor SRM1-like
Refseq	XP_028214154.1	0.0	transcription factor SRM1-like
Refseq	XP_028214155.1	0.0	transcription factor SRM1-like
Refseq	XP_028214156.1	0.0	transcription factor SRM1-like
Refseq	XP_028214157.1	0.0	transcription factor SRM1-like
Refseq	XP_028214158.1	0.0	transcription factor SRM1-like
Swissprot	Q9FNN6	1e-126	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0B2QGG1	0.0	A0A0B2QGG1_GLYSO; Transcription factor MYB1R1
TrEMBL	C6TGE3	0.0	C6TGE3_SOYBN; Uncharacterized protein
STRING	GLYMA18G18140.6	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-117	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G134200.9.p
Entrez Gene	100819797

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]