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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.18G124800.1.p |
| Common Name | GLYMA_18G124800, LOC100804480 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
Whirly |
| Protein Properties |
Length: 230aa MW: 25231.8 Da PI: 10.0003 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.18G124800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 203.4 | 2.7e-63 | 90 | 228 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90
s+yk+kaal++ ++ p+f ldsg+ k++++G +ll++a+a+++r+ydW++kq+f+ls+ e++++++l++++s effhdp++++s+eGkv
Glyma.18G124800.1.p 90 SIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKV 179
7***************************************************************************************** PP
Whirly 91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
rk lkvePlpdGsG+f+nlsv+n+lv+++es+++Pv+kae avl s ++
Glyma.18G124800.1.p 180 RKILKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLTSTFN 228
********************************************99885 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MSNLQLQIHS PPPSLLSYSS SSLSSSSSLK LFPNHPFSSK SLPFNTPKPF SLRCRHSDLF 60
DQNTLASTPR PTRPSASVGA LPPRVYVGYS IYKGKAALTL TPRPPEFMPL DSGAYKISKE 120
GYVLLQFAPA VGTRQYDWNR KQVFSLSVGE MGSVISLGAR DSYEFFHDPF KGKSDEGKVR 180
KILKVEPLPD GSGHFFNLSV QNKLVNVDES IYIPVTKAEL AVLTSTFNV*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-85 | 79 | 228 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-85 | 79 | 228 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-85 | 79 | 228 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-85 | 79 | 228 | 32 | 181 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.32965 | 0.0 | cotyledon| flower| hypocotyl| leaf| somatic embryo| stem |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235235 | 2e-71 | AC235235.1 Glycine max strain Williams 82 clone GM_WBb0028H01, complete sequence. |
