PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G124700.1.p
Common NameGLYMA_18G124700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 530aa    MW: 58306.3 Da    PI: 9.0863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G124700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-31175234159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Glyma.18G124700.1.p 175 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGTHNHP 234
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-32160236IPR003657WRKY domain
SuperFamilySSF1182901.29E-27169236IPR003657WRKY domain
PROSITE profilePS5081128.529170236IPR003657WRKY domain
SMARTSM007741.9E-37175235IPR003657WRKY domain
PfamPF031065.6E-27176234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MPKRNCIYFW KEYSMEAKQS EEINGNKDHN KLKREMGEVG EGNDNLKLSL AKLVKDSTSD  60
EESELVSLSL GISSTGQHEM KKKKNRNEKM RENEDLKDIL ALGLDIRFDS SAIKNLSTES  120
SCDGERKDEE LSETWPPSKV VKTIMRTRDK SEVSQHAELK KARVCIRARC DTLTMNDGCQ  180
WRKYGQKMAK GNPCPRAYYR CTVSPSCPVR KQVQRCAEDM SILITTYEGT HNHPLPTSAT  240
TIAYTTSAAA SMLQSPSLSS QLGPANSDTV PLINSSVAYN LNALNFTSSS YDQQFSKSSQ  300
HLYFHNSSIS TSNSHPTITL DLTSPQTSPH VGKFTPGLSF IPKHSSTNLH FSSSTFSPLQ  360
SSMLQSPWSP YGDCFNYEGL ITQNSNQNGF LTKTGKQPFQ GHLYQPNYIS NRVISQQPLP  420
DSVVAATKAI TATPKFQSAI AAALTAYVGN GVRENHVGAE SAGLDLNLGG DMPYTTKKAD  480
YTSNASRYKR MSSSAPTAPK RNLVISQPLQ ASKSSFGSSS LKSNQFIDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21162236174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G124700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014626273.10.0probable WRKY transcription factor 72
TrEMBLK7MRM90.0K7MRM9_SOYBN; Uncharacterized protein
STRINGGLYMA18G16170.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-50WRKY DNA-binding protein 61