PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 31693.4 Da PI: 5.7435

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.18G123500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.2e-18	75	128	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.18G123500.1.p 75 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 128 456899***********************************************9 PP
2	HD-ZIP_I/II	132.3	1.9e-42	74	164	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+yda+k++n++L++++++L++e Glyma.18G123500.1.p 74 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAIKADNDALQAQNQKLQTE 163 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.18G123500.1.p 164 I 164 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-19	68	132	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	70	130	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	73	134	IPR001356	Homeobox domain
CDD	cd00086	8.76E-16	75	131	No hit	No description
Pfam	PF00046	1.5E-15	75	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	77	137	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	101	110	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	105	128	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	110	126	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-16	130	170	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAFFPANFML QTPHQDDHQP PPSLNSIITS CAPQEYHGGA SFLGKRSMSF SGIELGEEAN 60 AEEDLSDDGS QAGEKKRRLN MEQVKTLEKS FELGNKLEPE RKMQLARALG LQPRQIAIWF 120 QNRRARWKTK QLEKDYDLLK RQYDAIKADN DALQAQNQKL QTEILALKNR EPTESINLNK 180 ETEGSSSNRS ENSSEIKLDI SRTPAIDSPL STQQSNSRTL FPSSARPTGV AQLFQTTPRP 240 EIQCQKIDHM VKEESLSNMF CGIDDQSGLW PWLEQQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	130	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.56312	0.0	cotyledon\| flower\| hypocotyl\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.18G123500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094375	0.0	BT094375.1 Soybean clone JCVI-FLGm-24F2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028215323.1	0.0	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	1e-116	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0B2RM11	0.0	A0A0B2RM11_GLYSO; Homeobox-leucine zipper protein ATHB-13
TrEMBL	I1N172	0.0	I1N172_SOYBN; Uncharacterized protein
STRING	GLYMA18G15970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-107	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.18G123500.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]