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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.18G081100.1.p |
Common Name | GLYMA_18G081100, LOC100785400 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
GRAS |
Protein Properties |
Length: 546aa MW: 61188.9 Da PI: 5.0256 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.18G081100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 424.2 | 1.1e-129 | 175 | 544 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e L++cAea++ +d+e +++l+++l++++s +g+p+qRl ay++e ar+a s+s++yk+l++se + e l+++++++e++P+
Glyma.18G081100.1.p 175 LKEMLYTCAEAMARNDMETTDWLVSELRKMVSISGNPIQRLGAYILESFVARMAASGSTIYKSLKCSEPT---GNELLSYMHVLYEICPY 261
5789*****************************************************************9...99*************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
+kf+++ aN aI ea+++e++vHi+Df+i+qG+QW++L+qaLa Rp+gpp++Ri gv+++ s + l +g+rL+ A++++vpfef
Glyma.18G081100.1.p 262 FKFGYMSANGAIAEALKEESEVHIVDFQIGQGTQWVSLIQALAHRPGGPPKIRISGVDDSYSAyaRGGGLDIVGKRLSAHAQSCHVPFEF 351
***********************************************************877788999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
n+ v ++++le+L++ p Ea+aVn++++lh+++desv+++++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf e+++yy a+f
Glyma.18G081100.1.p 352 NA-VRVPASQVQLEDLELLPYEAVAVNFAISLHHVPDESVNSHNHRDRLLRLAKRLSPKVVTLVEQEFNTNNAPFLQRFDETMKYYLAVF 440
**.7999*********************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s+++ lpre++eri+vE+++l+re+vn++aceg+er+erhe l+kW++r+++aGF+p+pls+ +++++k ll+ ++++ y++ee++g+l
Glyma.18G081100.1.p 441 ESIDTVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWKMRFTKAGFTPYPLSSVINSSIKDLLQSYHGH-YTLEERDGAL 529
*****************************************************************************77.********** PP
GRAS 359 vlgWkdrpLvsvSaW 373
+lgW+++ L++ +aW
Glyma.18G081100.1.p 530 FLGWMNQVLIASCAW 544
*************** PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MQTSQNHKIS YGSGGFYVEP VQNLESYCMP SSENIDNYSS SDNSSQTTYP SVQTLEQYCT 60 LESASTGNSF PNQNSPPALS FSSNNSPLSK LESNSYVLRP QHSLEIASGS PEDDSYLTHD 120 LDDLTHKIRE LETAMLGPNA DMLDIYGTVI PEPDSFLLEA EKWKKLMEMS SRGDLKEMLY 180 TCAEAMARND METTDWLVSE LRKMVSISGN PIQRLGAYIL ESFVARMAAS GSTIYKSLKC 240 SEPTGNELLS YMHVLYEICP YFKFGYMSAN GAIAEALKEE SEVHIVDFQI GQGTQWVSLI 300 QALAHRPGGP PKIRISGVDD SYSAYARGGG LDIVGKRLSA HAQSCHVPFE FNAVRVPASQ 360 VQLEDLELLP YEAVAVNFAI SLHHVPDESV NSHNHRDRLL RLAKRLSPKV VTLVEQEFNT 420 NNAPFLQRFD ETMKYYLAVF ESIDTVLPRE HKERINVEQH CLAREVVNLI ACEGEERVER 480 HELLNKWKMR FTKAGFTPYP LSSVINSSIK DLLQSYHGHY TLEERDGALF LGWMNQVLIA 540 SCAWS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |