PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G039200.1.p
Common NameGLYMA_18G039200, LOC100810010
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 340aa    MW: 37946.7 Da    PI: 8.9674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G039200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.7e-10254295955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Glyma.18G039200.1.p 254 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 295
                          69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-12244302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-13244303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-10247299No hitNo description
SMARTSM003531.0E-11251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-7255295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALSKDQRIP HDSSMSSKVQ NCVFSETSVE ITSMTVHRVN EYHKSVLEEE DGSQTTNGLS  60
NDSAVTRSPP LCGSRKDYAY KGTNYQLEEA VSLIDFKGYS NILQASGSLL SFQQNKMVPL  120
NCYLKDNGQK EYCVWENNLH QGHNHWNQTS PRSTRDMRLV ENLNCFQTSS GYSPIVNNAK  180
EKQHGQSSSG WLYSAPTIPN DISSLHKSGA QESVLQKRPS MGENMKAAKK QCSTESKTPK  240
HKSSPSKDPQ SVAAKNRRER ISERLKILQE LVPNGSKVDL VTMLEKAISY VKFLQLQVKV  300
LATDEFWPVQ GGKPPEISQV KEVIDVILSS QRERSSCSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G039200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552876.10.0putative transcription factor bHLH086
TrEMBLI1MZD50.0I1MZD5_SOYBN; Uncharacterized protein
STRINGGLYMA18G04420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.17e-55RHD SIX-LIKE 1