PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G036000.1.p
Common NameGLYMA_18G036000, LOC102663477
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 260aa    MW: 29073.7 Da    PI: 8.4102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G036000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H+++H
  Glyma.18G036000.1.p 58 YSCNFCKREFRSAQALGGHMNVH 80
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-65585No hitNo description
PROSITE profilePS5015711.2195885IPR007087Zinc finger, C2H2
PfamPF139127.1E-65881IPR007087Zinc finger, C2H2
SMARTSM003550.00725880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEESQYLLWI KRKQILKSHI QQPFGTSNNN NSSSWEERAF AEDAARILGG CIWPPRSYSC  60
NFCKREFRSA QALGGHMNVH RRDRARLKQS LSHHNEALQH HQKNDCTVAT SKVSSSRAST  120
ISTQEICSHQ PTMSLYSSLI GWGHHHHMES PDSEPKGQVN AREEFLKGLG CNDYVETSLS  180
VGQSAVFGQK LPTTESCGDE SISYKRSKTS MPPLPGVFLK PCSNDRNLTF QSAEFVLGLK  240
PGMEDLDLEL RLGKPQKVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-135380229superman protein
2l1o_A8e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G036000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-139AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601993.10.0zinc finger protein 10
RefseqXP_028213770.10.0zinc finger protein 10-like
TrEMBLA0A445FNQ10.0A0A445FNQ1_GLYSO; Zinc finger protein 10
TrEMBLI1MZA50.0I1MZA5_SOYBN; Uncharacterized protein
STRINGGLYMA18G04030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-25zinc-finger protein 10