PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G030300.3.p
Common NameGLYMA_18G030300, LOC100783469
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 300aa    MW: 34859.3 Da    PI: 8.4425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G030300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082671346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          WT eE +++  a + + ++   +W ++a++++ g+t ++++  ++ 
  Glyma.18G030300.3.p 26 EWTREENKKFESALAIYDKDtpdRWLRVAAMLP-GKTVYDVIKQYRE 71
                         6********************************.********99986 PP
2Myb_DNA-binding42.31.8e-13126170347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Glyma.18G030300.3.p 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2992276IPR017884SANT domain
SMARTSM007172.2E-82375IPR001005SANT/Myb domain
CDDcd001671.18E-62672No hitNo description
PfamPF002492.0E-62671IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-112679IPR009057Homeodomain-like
PROSITE profilePS5129419.353119175IPR017930Myb domain
SuperFamilySSF466893.09E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.7E-11123169IPR009057Homeodomain-like
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
CDDcd001673.12E-8126170No hitNo description
PfamPF002495.7E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFETPHQTC FMSNSSWFSQ ESHYTEWTRE ENKKFESALA IYDKDTPDRW LRVAAMLPGK  60
TVYDVIKQYR ELEEDVCEIE AGRIPVPGYP TSSFTLKMVD NQCYDACRKK PATLRSSDQE  120
RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKLSGGK  180
DNKRRPSIHD ITIVNLTSDQ EKPLLLNDES HMTFEQQKLT SMPKVQLEWI NHHDNGSRMV  240
VNPNYDMFMS PSSGISSKTL KLQGQDFYEC AFHETYAKLK NSGFRTTSRD FNKEGIHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1727971181RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212080.0seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G030300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312000.0KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601963.10.0transcription factor DIVARICATA
RefseqXP_006601964.10.0transcription factor DIVARICATA
RefseqXP_006601965.10.0transcription factor DIVARICATA
RefseqXP_006601966.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLK7MPL90.0K7MPL9_SOYBN; Uncharacterized protein
STRINGGLYMA18G03430.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-89MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]